Executables in CoCalc (Ubuntu 22.04)
This is a non-comprehensive list of executables available on CoCalc.
To run anything listed below, you need to either open a "Terminal" or run the command indirectly via a Jupyter notebook.
On CoCalc, you can also install or compile your own executable binaries. You have a lot of control about your own project, which is a containerized environment based on x86_64 Ubuntu Linux 22.04.
Showing 318 executables
| Path | Information |
|---|---|
/usr/bin/4ti2-zsolve | ------------------------------------------------- 4ti2 version 1.6.9 Copyright 1998, 2002, 2006, 2015 4ti2 team. 4ti2 comes with ABSOLUTELY NO WARRANTY. This is free software, and you are welcome to redistribute it under certain conditions. For details, see the file COPYING. ------------------------------------------------- |
/usr/bin/7z |
7-Zip [64] 16.02 : Copyright (c) 1999-2016 Igor Pavlov : 2016-05-21
p7zip Version 16.02 (locale=C.UTF-8,Utf16=on,HugeFiles=on,64 bits,8 CPUs Intel(R) Xeon(R) CPU @ 2.80GHz (50657),ASM,AES-NI)
Usage: 7z <command> [<switches>...] <archive_name> [<file_names>...]
[<@listfiles...>]
<Commands>
a : Add files to archive
b : Benchmark
d : Delete files from archive
e : Extract files from archive (without using directory names)
h : Calculate hash values for files
i : Show information about supported formats
l : List contents of archive
rn : Rename files in archive
t : Test integrity of archive
u : Update files to archive
x : eXtract files with full paths
<Switches>
-- : Stop switches parsing
-ai[r[-|0]]{@listfile|!wildcard} : Include archives
-ax[r[-|0]]{@listfile|!wildcard} : eXclude archives
-ao{a|s|t|u} : set Overwrite mode
-an : disable archive_name field
-bb[0-3] : set output log level
-bd : disable progress indicator
-bs{o|e|p}{0|1|2} : set output stream for output/error/progress line
-bt : show execution time statistics
-i[r[-|0]]{@listfile|!wildcard} : Include filenames
-m{Parameters} : set compression Method
-mmt[N] : set number of CPU threads
-o{Directory} : set Output directory
-p{Password} : set Password
-r[-|0] : Recurse subdirectories
-sa{a|e|s} : set Archive name mode
-scc{UTF-8|WIN|DOS} : set charset for for console input/output
-scs{UTF-8|UTF-16LE|UTF-16BE|WIN|DOS|{id}} : set charset for list files
-scrc[CRC32|CRC64|SHA1|SHA256|*] : set hash function for x, e, h commands
-sdel : delete files after compression
-seml[.] : send archive by email
-sfx[{name}] : Create SFX archive
-si[{name}] : read data from stdin
-slp : set Large Pages mode
-slt : show technical information for l (List) command
-snh : store hard links as links
-snl : store symbolic links as links
-sni : store NT security information
-sns[-] : store NTFS alternate streams
-so : write data to stdout
-spd : disable wildcard matching for file names
-spe : eliminate duplication of root folder for extract command
-spf : use fully qualified file paths
-ssc[-] : set sensitive case mode
-ssw : compress shared files
-stl : set archive timestamp from the most recently modified file
-stm{HexMask} : set CPU thread affinity mask (hexadecimal number)
-stx{Type} : exclude archive type
-t{Type} : Set type of archive
-u[-][p#][q#][r#][x#][y#][z#][!newArchiveName] : Update options
-v{Size}[b|k|m|g] : Create volumes
-w[{path}] : assign Work directory. Empty path means a temporary directory
-x[r[-|0]]{@listfile|!wildcard} : eXclude filenames
-y : assume Yes on all queries |
/usr/bin/advpng | advancecomp vnone by Andrea Mazzoleni, http://www.advancemame.it |
/usr/bin/ag | ag version 2.2.0 Features: +jit +lzma +zlib |
/usr/bin/ant | Picked up _JAVA_OPTIONS: -Xms64m Apache Ant(TM) version 1.10.12 compiled on January 17 1970 |
/ext/bin/nosudo/apt |
╔═════════════════════════════════════════════════════════════╗
║ ⚠ SYSTEM UTILITY NOT AVAILABLE -> USE COMPUTE SERVERS ⚠ ║
╠═════════════════════════════════════════════════════════════╣
║ It is not possible to run this utility in a CoCalc project. ║
╟─────────────────────────────────────────────────────────────╢
║ However, you can become an admin in a 𝗖𝗢𝗠𝗣𝗨𝗧𝗘 𝗦𝗘𝗥𝗩𝗘𝗥! ║
║ Learn more here: https://doc.cocalc.com/compute_server.html ║
╚═════════════════════════════════════════════════════════════╝
apt 2.4.13 (amd64)
Usage: apt [options] command
apt is a commandline package manager and provides commands for
searching and managing as well as querying information about packages.
It provides the same functionality as the specialized APT tools,
like apt-get and apt-cache, but enables options more suitable for
interactive use by default.
Most used commands:
list - list packages based on package names
search - search in package descriptions
show - show package details
install - install packages
reinstall - reinstall packages
remove - remove packages
autoremove - Remove automatically all unused packages
update - update list of available packages
upgrade - upgrade the system by installing/upgrading packages
full-upgrade - upgrade the system by removing/installing/upgrading packages
edit-sources - edit the source information file
satisfy - satisfy dependency strings
See apt(8) for more information about the available commands.
Configuration options and syntax is detailed in apt.conf(5).
Information about how to configure sources can be found in sources.list(5).
Package and version choices can be expressed via apt_preferences(5).
Security details are available in apt-secure(8).
This APT has Super Cow Powers. |
/ext/bin/nosudo/apt-get |
╔═════════════════════════════════════════════════════════════╗
║ ⚠ SYSTEM UTILITY NOT AVAILABLE -> USE COMPUTE SERVERS ⚠ ║
╠═════════════════════════════════════════════════════════════╣
║ It is not possible to run this utility in a CoCalc project. ║
╟─────────────────────────────────────────────────────────────╢
║ However, you can become an admin in a 𝗖𝗢𝗠𝗣𝗨𝗧𝗘 𝗦𝗘𝗥𝗩𝗘𝗥! ║
║ Learn more here: https://doc.cocalc.com/compute_server.html ║
╚═════════════════════════════════════════════════════════════╝
apt 2.4.13 (amd64)
Usage: apt-get [options] command
apt-get [options] install|remove pkg1 [pkg2 ...]
apt-get [options] source pkg1 [pkg2 ...]
apt-get is a command line interface for retrieval of packages
and information about them from authenticated sources and
for installation, upgrade and removal of packages together
with their dependencies.
Most used commands:
update - Retrieve new lists of packages
upgrade - Perform an upgrade
install - Install new packages (pkg is libc6 not libc6.deb)
reinstall - Reinstall packages (pkg is libc6 not libc6.deb)
remove - Remove packages
purge - Remove packages and config files
autoremove - Remove automatically all unused packages
dist-upgrade - Distribution upgrade, see apt-get(8)
dselect-upgrade - Follow dselect selections
build-dep - Configure build-dependencies for source packages
satisfy - Satisfy dependency strings
clean - Erase downloaded archive files
autoclean - Erase old downloaded archive files
check - Verify that there are no broken dependencies
source - Download source archives
download - Download the binary package into the current directory
changelog - Download and display the changelog for the given package
See apt-get(8) for more information about the available commands.
Configuration options and syntax is detailed in apt.conf(5).
Information about how to configure sources can be found in sources.list(5).
Package and version choices can be expressed via apt_preferences(5).
Security details are available in apt-secure(8).
This APT has Super Cow Powers. |
/usr/bin/asciidoc | asciidoc 10.1.2 |
/usr/bin/aspell | @(#) International Ispell Version 3.1.20 (but really Aspell 0.60.8) |
/usr/bin/asy | Asymptote version 2.78 [(C) 2004 Andy Hammerlindl, John C. Bowman, Tom Prince] ENABLED OPTIONS: V3D 3D vector graphics output WebGL 3D HTML rendering OpenGL 3D OpenGL rendering SSBO GLSL shader storage buffer objects GSL GNU Scientific Library (special functions) FFTW3 Fast Fourier transforms XDR External Data Representation (portable binary file format for V3D) CURL URL support LSP Language Server Protocol Readline Interactive history and editing Sigsegv Distinguish stack overflows from segmentation faults GC Boehm garbage collector threads Render OpenGL in separate thread DISABLED OPTIONS: |
/usr/bin/autoconf | autoconf (GNU Autoconf) 2.71 Copyright (C) 2021 Free Software Foundation, Inc. License GPLv3+/Autoconf: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>, <https://gnu.org/licenses/exceptions.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by David J. MacKenzie and Akim Demaille. |
/usr/bin/automake | automake (GNU automake) 1.16.5 Copyright (C) 2021 Free Software Foundation, Inc. License GPLv2+: GNU GPL version 2 or later <https://gnu.org/licenses/gpl-2.0.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Tom Tromey <[email protected]> and Alexandre Duret-Lutz <[email protected]>. |
/usr/local/bin/autopep8 | autopep8 2.3.1 (pycodestyle: 2.12.0) |
/usr/bin/bash | GNU bash, version 5.1.16(1)-release (x86_64-pc-linux-gnu) Copyright (C) 2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software; you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. |
/usr/bin/bazel | bazel 7.3.1 |
/usr/bin/bc | bc 1.07.1 Copyright 1991-1994, 1997, 1998, 2000, 2004, 2006, 2008, 2012-2017 Free Software Foundation, Inc. |
/ext/bin/bedtools | bedtools v2.31.1 |
/usr/bin/biber | biber version: 2.17 |
/usr/bin/bibtex | BibTeX 0.99d (TeX Live 2022/dev/Debian) kpathsea version 6.3.4/dev Copyright 2021 Oren Patashnik. There is NO warranty. Redistribution of this software is covered by the terms of both the BibTeX copyright and the Lesser GNU General Public License. For more information about these matters, see the file named COPYING and the BibTeX source. Primary author of BibTeX: Oren Patashnik. |
/usr/local/bin/black | black, 24.8.0 (compiled: yes) Python (CPython) 3.10.12 |
/ext/bin/bliss | bliss version 0.77 |
/usr/bin/bun | 1.1.20 |
/usr/bin/bup | 0.32 |
/usr/bin/cabal | cabal-install version 3.0.0.0 compiled using version 3.0.1.0 of the Cabal library |
/usr/local/bin/cadabra2 | Info at https://cadabra.science/ Available under the terms of the GNU General Public License v3 Cadabra 2.3.9 (build 1.be7ecac dated 2022-06-26) Copyright (C) 2001-2022 Kasper Peeters <[email protected]> Using SymPy version 1.9 > > now exiting Shell... |
/usr/bin/cal | September 2024
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/usr/bin/calc | C-style arbitrary precision calculator w/custom functions (version 2.12.7.2) |
/ext/bin/cargo | cargo 1.71.1 (7f1d04c00 2023-07-29) |
/usr/bin/cbc | Welcome to the CBC MILP Solver Version: 2.10.7 Build Date: Feb 14 2022 command line - cbc -help (default strategy 1) Cbc version 2.10.7, build Feb 14 2022 Non default values:- Perturbation 50 (default 100) Presolve being done with 5 passes Dual steepest edge steep/partial on matrix shape and factorization density Clpnnnn taken out of messages If Factorization frequency default then done on size of matrix (-)unitTest, (-)netlib or (-)netlibp will do standard tests You can switch to interactive mode at any time so clp watson.mps -scaling off -primalsimplex is the same as clp watson.mps - scaling off primalsimplex Total time (CPU seconds): 0.01 (Wallclock seconds): 0.00 |
/usr/bin/ccache | ccache version 4.5.1 Features: file-storage http-storage redis-storage Copyright (C) 2002-2007 Andrew Tridgell Copyright (C) 2009-2021 Joel Rosdahl and other contributors See <https://ccache.dev/credits.html> for a complete list of contributors. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. |
/usr/bin/ccmake | ccmake version 3.30.2 CMake suite maintained and supported by Kitware (kitware.com/cmake). |
/ext/bin/cdo | Climate Data Operators version 2.4.0 (https://mpimet.mpg.de/cdo)
System: x86_64-conda-linux-gnu
CXX Compiler: /home/conda/feedstock_root/build_artifacts/cdo_1709914590931/_build_env/bin/x86_64-conda-linux-gnu-c++ -std=gnu++20 -fPIC -DPIC -g -O2 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /ext/miniforge2023/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/cdo_1709914590931/work=/usr/local/src/conda/cdo-2.4.0 -fdebug-prefix-map=/ext/miniforge2023=/usr/local/src/conda-prefix -fopenmp -pthread
CXX version : unknown
C Compiler: /home/conda/feedstock_root/build_artifacts/cdo_1709914590931/_build_env/bin/x86_64-conda-linux-gnu-cc -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /ext/miniforge2023/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/cdo_1709914590931/work=/usr/local/src/conda/cdo-2.4.0 -fdebug-prefix-map=/ext/miniforge2023=/usr/local/src/conda-prefix -fopenmp -pthread -pthread
C version : unknown
F77 Compiler: /home/conda/feedstock_root/build_artifacts/cdo_1709914590931/_build_env/bin/x86_64-conda-linux-gnu-gfortran -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /ext/miniforge2023/include -fdebug-prefix-map=/home/conda/feedstock_root/build_artifacts/cdo_1709914590931/work=/usr/local/src/conda/cdo-2.4.0 -fdebug-prefix-map=/ext/miniforge2023=/usr/local/src/conda-prefix
F77 version : GNU Fortran (conda-forge gcc 12.3.0-5) 12.3.0
Features: 62GB 8threads c++20 OpenMP45 Fortran pthreads HDF5 NC4/HDF5/threadsafe OPeNDAP udunits2 proj xml2 magics curl fftw3 sse3
Libraries: yac/3.1.0 NetCDF/4.9.2 HDF5/1.14.3 proj/9.3.1 xml2/2.12.5 curl/8.8.0(h8.5.0) magics/4.15.3
CDI data types: SizeType=size_t
CDI file types: srv ext ieg grb1 grb2 nc1 nc2 nc4 nc4c nc5 nczarr
CDI library version : 2.4.0
cgribex library version : 2.2.0
ecCodes library version : 2.35.0
NetCDF library version : 4.9.2 of Jun 6 2024 10:56:48 $
exse library version : 1.5.0
FILE library version : 1.9.1
|
/usr/bin/chafa | Chafa version 1.8.0 Features: mmx sse4.1 popcnt Applying: mmx sse4.1 popcnt Copyright (C) 2018-2021 Hans Petter Jansson et al. Incl. libnsgif copyright (C) 2004 Richard Wilson, copyright (C) 2008 Sean Fox This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/cheetah3 | 3.2.6 |
/usr/bin/chromedriver | ChromeDriver 128.0.6613.86 (3045ed680fdab64f784f3b366cfe74adbdf6ff01-refs/branch-heads/6613@{#1337}) |
/usr/bin/clang | Ubuntu clang version 14.0.0-1ubuntu1.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/bin |
/usr/bin/clang-format | Ubuntu clang-format version 14.0.0-1ubuntu1.1 |
/usr/bin/clasp | clasp version 3.3.5 Address model: 64-bit libclasp version 3.3.5 (libpotassco version 1.1.0) Configuration: WITH_THREADS=1 Copyright (C) Benjamin Kaufmann License: The MIT License <https://opensource.org/licenses/MIT> |
/usr/bin/clojure | Picked up _JAVA_OPTIONS: -Xms64m "1.10.2" |
/usr/bin/clp | Coin LP version 1.17.5, build Feb 17 2020 command line - clp -help No match for help - ? for list of commands Clp takes input from arguments ( - switches to stdin) Enter ? for list of commands or help Clp: |
/usr/local/bin/cmake | cmake version 3.26.0 CMake suite maintained and supported by Kitware (kitware.com/cmake). |
/usr/bin/code | Visual Studio Code 1.93.0
Usage: code [options][paths...]
To read from stdin, append '-' (e.g. 'ps aux | grep code | code -')
Options
-d --diff <file> <file> Compare two files with each
other.
-m --merge <path1> <path2> <base> <result> Perform a three-way merge by
providing paths for two modified
versions of a file, the common
origin of both modified versions
and the output file to save merge
results.
-a --add <folder> Add folder(s) to the last active
window.
-g --goto <file:line[:character]> Open a file at the path on the
specified line and character
position.
-n --new-window Force to open a new window.
-r --reuse-window Force to open a file or folder in
an already opened window.
-w --wait Wait for the files to be closed
before returning.
--locale <locale> The locale to use (e.g. en-US or
zh-TW).
--user-data-dir <dir> Specifies the directory that user
data is kept in. Can be used to
open multiple distinct instances
of Code.
--profile <profileName> Opens the provided folder or
workspace with the given profile
and associates the profile with
the workspace. If the profile
does not exist, a new empty one
is created.
-h --help Print usage.
Extensions Management
--extensions-dir <dir> Set the root path for extensions.
--list-extensions List the installed extensions.
--show-versions Show versions of installed extensions,
when using --list-extensions.
--category <category> Filters installed extensions by provided
category, when using --list-extensions.
--install-extension <ext-id | path> Installs or updates an extension. The
argument is either an extension id or a
path to a VSIX. The identifier of an
extension is '${publisher}.${name}'. Use
'--force' argument to update to latest
version. To install a specific version
provide '@${version}'. For example:
'[email protected]'.
--pre-release Installs the pre-release version of the
extension, when using
--install-extension
--uninstall-extension <ext-id> Uninstalls an extension.
--update-extensions Update the installed extensions.
--enable-proposed-api <ext-id> Enables proposed API features for
extensions. Can receive one or more
extension IDs to enable individually.
Troubleshooting
-v --version Print version.
--verbose Print verbose output (implies --wait).
--log <level> Log level to use. Default is 'info'. Allowed
values are 'critical', 'error', 'warn',
'info', 'debug', 'trace', 'off'. You can
also configure the log level of an extension
by passing extension id and log level in the
following format:
'${publisher}.${name}:${logLevel}'. For
example: 'vscode.csharp:trace'. Can receive
one or more such entries.
-s --status Print process usage and diagnostics
information.
--prof-startup Run CPU profiler during startup.
--disable-extensions Disable all installed extensions. This option
is not persisted and is effective only when
the command opens a new window.
--disable-extension <ext-id> Disable the provided extension. This option
is not persisted and is effective only when
the command opens a new window.
--sync <on | off> Turn sync on or off.
--inspect-extensions <port> Allow debugging and profiling of extensions.
Check the developer tools for the connection
URI.
--inspect-brk-extensions <port> Allow debugging and profiling of extensions
with the extension host being paused after
start. Check the developer tools for the
connection URI.
--disable-lcd-text Disable LCD font rendering.
--disable-gpu Disable GPU hardware acceleration.
--disable-chromium-sandbox Use this option only when there is
requirement to launch the application as
sudo user on Linux or when running as an
elevated user in an applocker environment on
Windows.
--telemetry Shows all telemetry events which VS code
collects.
Subcommands
tunnel Make the current machine accessible from vscode.dev or other
machines through a secure tunnel
serve-web Run a server that displays the editor UI in browsers.
|
/usr/bin/code-server | i18next: languageChanged en
i18next: initialized {
debug: true,
initImmediate: true,
ns: [ 'translation' ],
defaultNS: [ 'translation' ],
fallbackLng: [ 'en' ],
fallbackNS: false,
supportedLngs: false,
nonExplicitSupportedLngs: false,
load: 'all',
preload: false,
simplifyPluralSuffix: true,
keySeparator: '.',
nsSeparator: ':',
pluralSeparator: '_',
contextSeparator: '_',
partialBundledLanguages: false,
saveMissing: false,
updateMissing: false,
saveMissingTo: 'fallback',
saveMissingPlurals: true,
missingKeyHandler: false,
missingInterpolationHandler: false,
postProcess: false,
postProcessPassResolved: false,
returnNull: false,
returnEmptyString: true,
returnObjects: false,
joinArrays: false,
returnedObjectHandler: false,
parseMissingKeyHandler: false,
appendNamespaceToMissingKey: false,
appendNamespaceToCIMode: false,
overloadTranslationOptionHandler: [Function: handle],
interpolation: {
escapeValue: true,
format: [Function: bound format],
prefix: '{{',
suffix: '}}',
formatSeparator: ',',
unescapePrefix: '-',
nestingPrefix: '$t(',
nestingSuffix: ')',
nestingOptionsSeparator: ',',
maxReplaces: 1000,
skipOnVariables: true
},
lng: 'en',
lowerCaseLng: true,
resources: {
en: { translation: [Object] },
'zh-cn': { translation: [Object] },
th: { translation: [Object] },
ja: { translation: [Object] },
ur: { translation: [Object] }
},
ignoreJSONStructure: true
}
4.92.2 de65bfc9477f61bc22d0b1a23085d1f18bb25202 with Code 1.92.2 |
/usr/bin/coffee | CoffeeScript version 2.7.0 |
/ext/data/homer/configureHomer.pl | Current base directory for HOMER is /ext/data/homer/ /ext/data/homer//update.txt: Read-only file system Updating Settings... Packages with name conflicts have a trailing -o, -p, or -g Version Installed Package Version Description SOFTWARE v4.9.1 homer v4.11.1 Code/Executables, ontologies, motifs for HOMER ORGANISMS v5.10 human-o v6.3 Homo sapiens (human) accession and ontology information - yeast-o v6.3 Saccharomyces cerevisiae (yeast) accession and ontology information - mosquito v6.3 Anopheles gambiae (mosquito) accession and ontology information - frog-o v6.3 Xenopus tropicalis (frog) accession and ontology information - dog v6.3 Canis lupus familiaris (dog) accession and ontology information - cow v5.4 Bos taurus (cow) accession and ontology information - pseudonana v6.3 Thalassiosira pseudonana (pseudonana) accession and ontology information - zebrafinch v6.3 Taeniopygia guttata (zebrafinch) accession and ontology information - seahare v6.3 Aplysia californica (seahare) accession and ontology information - pig v6.3 Sus scrofa (pig) accession and ontology information - worm-o v6.3 Caenorhabditis elegans (worm) accession and ontology information - rat-o v6.3 Rattus norvegicus (rat) accession and ontology information - dicty v6.3 Dictyostelium discoideum (dicty) accession and ontology information - mouse-o v6.3 Mus musculus (mouse) accession and ontology information - rice v6.3 Oryza sativa (rice) accession and ontology information - chicken-o v6.3 Gallus gallus (chicken) accession and ontology information - bee v6.3 Apis mellifera (bee) accession and ontology information - pombe v6.3 Schizosaccharomyces pombe (pombe) accession and ontology information - fugu v6.3 Takifugu rubripes (fugu) accession and ontology information - urchin v6.3 Strongylocentrotus purpuratus (urchin) accession and ontology information - lamprey v6.3 Petromyzon marinus (lamprey) accession and ontology information - hydra v6.3 Hydra vulgaris (hydra) accession and ontology information - fly-o v6.3 Drosophila melanogaster (fly) accession and ontology information - ncrassa v6.3 Neurospora crassa (ncrassa) accession and ontology information - diatom v6.3 Phaeodactylum tricornutum (diatom) accession and ontology information - cocci v6.3 Coccidioides immitis RS (cocci) accession and ontology information - selaginella v6.3 Selaginella moellendorffii (selaginella) accession and ontology information - patens v6.3 Physcomitrella patens (patens) accession and ontology information - ciliate v6.3 Tetrahymena thermophila (ciliate) accession and ontology information - laevis v6.3 Xenopus laevis (laevis) accession and ontology information - corn v6.3 Zea mays (corn) accession and ontology information - arabidopsis-o v6.3 Arabidopsis thaliana (arabidopsis) accession and ontology information - ciona v6.3 Ciona intestinalis (ciona) accession and ontology information - volvox v6.3 Volvox carteri (volvox) accession and ontology information - zebrafish-o v6.3 Danio rerio (zebrafish) accession and ontology information - rhesus v6.3 Macaca mulatta (rhesus) accession and ontology information - chlamy v6.3 Chlamydomonas reinhardtii (chlamy) accession and ontology information - balbc_cocci v5.2 Balbc/J mouse and Coccidioides genome combined - anemone v6.3 Nematostella vectensis (anemone) accession and ontology information - tomato v6.3 Solanum lycopersicum (tomato) accession and ontology information - ascomycetes v6.0 Neurospora crassa (ascomycetes) accession and ontology information - mushroom v6.3 Agaricus bisporus (mushroom) accession and ontology information PROMOTERS - chicken-p v5.5 chicken promoters (chicken) - zebrafish-p v5.5 zebrafish promoters (zebrafish) - yeast-p v5.5 yeast promoters (yeast) - mouse-p v5.5 mouse promoters (mouse) - frog-p v5.5 frog promoters (frog) - arabidopsis-p v6.3 arabidopsis promoters (arabidopsis) - human-p v5.5 human promoters (human) - worm-p v5.5 worm promoters (worm) - fly-p v5.5 fly promoters (fly) - rat-p v5.5 rat promoters (rat) GENOMES v5.10 hg18 v6.4 human genome and annotation for UCSC hg18 - gorGor4 v6.4 human genome and annotation for UCSC gorGor4 - petMar2 v6.4 lamprey genome and annotation for UCSC petMar2 - panTro5 v6.4 human genome and annotation for UCSC panTro5 - dm6 v6.4 fly genome and annotation for UCSC dm6 - mm8 v6.4 mouse genome and annotation for UCSC mm8 - ci2 v6.4 ciona genome and annotation for UCSC ci2 - rn5 v6.4 rat genome and annotation for UCSC rn5 - hg17 v6.4 human genome and annotation for UCSC hg17 - patens.ASM242v1 v5.10 patens genome and annotation (patens.ASM242v1) - anoGam1 v6.4 mosquito genome and annotation for UCSC anoGam1 - petMar3 v6.4 lamprey genome and annotation for UCSC petMar3 - fr3 v6.4 fugu genome and annotation for UCSC fr3 - xenTro2 v6.4 frog genome and annotation for UCSC xenTro2 - galGal4 v6.4 chicken genome and annotation for UCSC galGal4 - apiMel2 v6.4 bee genome and annotation for UCSC apiMel2 - ce10 v6.4 worm genome and annotation for UCSC ce10 - xenTro7 v6.4 frog genome and annotation for UCSC xenTro7 - galGal6 v6.4 chicken genome and annotation for UCSC galGal6 - dm3 v6.0 fly genome and annotation for UCSC dm3 - xenTro9 v6.4 frog genome and annotation for UCSC xenTro9 - xenTro3 v6.4 frog genome and annotation for UCSC xenTro3 - ci3 v6.4 ciona genome and annotation for UCSC ci3 - mm9 v6.4 mouse genome and annotation for UCSC mm9 - apiMel3 v6.4 bee genome and annotation for UCSC apiMel3 - hg38 v6.4 human genome and annotation for UCSC hg38 - rn4 v6.4 rat genome and annotation for UCSC rn4 - rice.IRGSP-1.0 v5.10 rice genome and annotation (rice.IRGSP-1.0) - panTro3 v6.4 human genome and annotation for UCSC panTro3 - mm10 v6.4 mouse genome and annotation for UCSC mm10 - panPan2 v6.4 human genome and annotation for UCSC panPan2 - ce11 v6.4 worm genome and annotation for UCSC ce11 - corn.AGPv3 v5.10 corn genome and annotation (corn.AGPv3) - tetNig2 v6.4 fugu genome and annotation for UCSC tetNig2 - rheMac3 v6.4 rhesus genome and annotation for UCSC rheMac3 - sacCer3 v6.4 yeast genome and annotation for UCSC sacCer3 - rheMac8 v6.4 rhesus genome and annotation for UCSC rheMac8 - hg19 v6.4 human genome and annotation for UCSC hg19 - AGPv3 v5.10 corn genome and annotation (AGPv3) - gorGor3 v6.4 human genome and annotation for UCSC gorGor3 - sacCer2 v6.4 yeast genome and annotation for UCSC sacCer2 - panPan1 v6.4 human genome and annotation for UCSC panPan1 - danRer7 v6.4 zebrafish genome and annotation for UCSC danRer7 - ce6 v6.4 worm genome and annotation for UCSC ce6 - rheMac2 v6.4 rhesus genome and annotation for UCSC rheMac2 - taeGut2 v6.4 zebrafinch genome and annotation for UCSC taeGut2 - strPur2 v6.0 urchin genome and annotation for UCSC strPur2 - galGal5 v6.4 chicken genome and annotation for UCSC galGal5 - danRer11 v6.4 zebrafish genome and annotation for UCSC danRer11 - susScr11 v6.4 pig genome and annotation for UCSC susScr11 - tair10 v6.0 arabidopsis genome and annotation (tair10) - panTro4 v6.4 human genome and annotation for UCSC panTro4 - aplCal1 v6.4 seahare genome and annotation for UCSC aplCal1 - canFam3 v6.4 dog genome and annotation for UCSC canFam3 - rn6 v6.4 rat genome and annotation for UCSC rn6 - panTro6 v6.4 human genome and annotation for UCSC panTro6 - papAnu2 v6.4 human genome and annotation for UCSC papAnu2 - susScr3 v6.4 pig genome and annotation for UCSC susScr3 - danRer10 v6.4 zebrafish genome and annotation for UCSC danRer10 - gorGor5 v6.4 human genome and annotation for UCSC gorGor5 SETTINGS |
/usr/bin/convert | Version: ImageMagick 6.9.11-60 Q16 x86_64 2021-01-25 https://imagemagick.org Copyright: (C) 1999-2021 ImageMagick Studio LLC License: https://imagemagick.org/script/license.php Features: Cipher DPC Modules OpenMP(4.5) Delegates (built-in): bzlib djvu fftw fontconfig freetype heic jbig jng jp2 jpeg lcms lqr ltdl lzma openexr pangocairo png tiff webp wmf x xml zlib |
/usr/bin/coqc | The Coq Proof Assistant, version 8.15.0 compiled with OCaml 4.13.1 |
/usr/bin/cpp | cpp (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/cpulimit | CPUlimit version 2.4
Usage: cpulimit TARGET [OPTIONS...] [-- PROGRAM]
TARGET must be exactly one of these:
-p, --pid=N pid of the process
-e, --exe=FILE name of the executable program file
The -e option only works when
cpulimit is run with admin rights.
-P, --path=PATH absolute path name of the
executable program file
OPTIONS
-b --background run in background
-f --foreground launch target process in foreground and wait for it to exit
-c --cpu=N override the detection of CPUs on the machine.
-l, --limit=N percentage of cpu allowed from 1 up.
Usually 1 - 800, but can be higher
on multi-core CPUs (mandatory)
-m, --monitor-forks Watch children/forks of the target process
-q, --quiet run in quiet mode (only print errors).
-k, --kill kill processes going over their limit
instead of just throttling them.
-r, --restore Restore processes after they have
been killed. Works with the -k flag.
-s, --signal=SIG Send this signal to the watched process when cpulimit exits.
Signal should be specificed as a number or
SIGTERM, SIGCONT, SIGSTOP, etc. SIGCONT is the default.
-v, --verbose show control statistics
-z, --lazy exit if there is no suitable target process,
or if it dies
-- This is the final CPUlimit option. All following
options are for another program we will launch.
-h, --help display this help and exit |
/usr/bin/csdp | CSDP 6.2.0 Usage: csdp <input problem> [<final solution>] [<initial solution>] |
/usr/bin/cvs | Concurrent Versions System (CVS) 1.12.13-MirDebian-28 (client/server) Copyright (C) 2005 Free Software Foundation, Inc. Copyright (c) 2021 mirabilos <[email protected]> Senior no longer active maintainers include Larry Jones, Derek R. Price, and Mark D. Baushke. Please see the AUTHORS and README files from the CVS distribution kit for a complete list of contributors and copyrights. CVS may be copied only under the terms of the GNU General Public License, a copy of which can be found with the CVS distribution kit. Specify the --help option for further information about CVS |
/usr/local/bin/cython | Cython version 0.29.30 |
/usr/bin/data | 0.10.1 |
/usr/bin/dbar | usage: dbar [-w <characters>] [-s <symbol>] [-min <minvalue>] [-max <maxvalue>] [-l <string>] [-nonl] |
/usr/bin/dia | Dia version 0.97+git, compiled 20:11:23 Mar 9 2022 |
/usr/bin/diff3 | diff3 (GNU diffutils) 3.8 Copyright (C) 2021 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Randy Smith. |
/usr/bin/docbook2pdf | DocBook-utils version 0.6.14 (jw version 1.1) |
/ext/bin/docker |
╔═══════════════════════════════════════════════════════╗
║ ⚠ DOCKER NOT AVAILABLE -> USE COMPUTE SERVERS ⚠ ║
╠═══════════════════════════════════════════════════════╣
║ CoCalc projects have a managed software environment ║
║ and do not offer elevated privileges for using docker ║
╟───────────────────────────────────────────────────────╢
║ But, you can become a full admin in a 𝗖𝗢𝗠𝗣𝗨𝗧𝗘 𝗦𝗘𝗥𝗩𝗘𝗥! ║
║ More info: https://doc.cocalc.com/compute_server.html ║
╚═══════════════════════════════════════════════════════╝
|
/usr/local/bin/docx2txt | usage: docx2txt [-h] [-i IMG_DIR] docx
A pure python-based utility to extract text and images from docx files.
positional arguments:
docx path of the docx file
options:
-h, --help show this help message and exit
-i IMG_DIR, --img_dir IMG_DIR
path of directory to extract images |
/usr/bin/dot | dot - graphviz version 2.43.0 (0) |
/usr/bin/dotty | dotty version 96c (09-24-96) Error: Can't open display: |
/ext/bin/dust | Dust 1.1.1 |
/usr/bin/dvips | This is dvips(k) 2021.1 (TeX Live 2022/dev) Copyright 2021 Radical Eye Software kpathsea version 6.3.4/dev Copyright 2021 Radical Eye Software. There is NO warranty. You may redistribute this software under the terms of the GNU General Public License and the Dvips copyright. For more information about these matters, see the files named COPYING and dvips.h. Primary author of Dvips: T. Rokicki. |
/usr/bin/ed | GNU ed 1.18 Copyright (C) 1994 Andrew L. Moore. Copyright (C) 2022 Antonio Diaz Diaz. License GPLv2+: GNU GPL version 2 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. |
/usr/bin/emacs | GNU Emacs 27.1 Copyright (C) 2020 Free Software Foundation, Inc. GNU Emacs comes with ABSOLUTELY NO WARRANTY. You may redistribute copies of GNU Emacs under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING. |
/usr/bin/encfs | encfs version 1.9.5 |
/usr/bin/erl | Erlang (SMP,ASYNC_THREADS) (BEAM) emulator version 12.2.1 |
/usr/local/bin/f2py | 1.23.5 |
/usr/bin/f77 | GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/f95 | GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/fastp | fastp 0.20.1 |
/usr/bin/fastqc | Picked up _JAVA_OPTIONS: -Xms64m FastQC v0.11.9 |
/usr/bin/fenics-version | 2019.2.0.13.dev0 |
/usr/bin/feynmf | This is feynmf: $Id: feynmf.pl,v 1.5 1996/12/02 01:38:45 ohl Exp $ |
/usr/bin/ffmpeg | ffmpeg version 4.4.2-0ubuntu0.22.04.1 Copyright (c) 2000-2021 the FFmpeg developers built with gcc 11 (Ubuntu 11.2.0-19ubuntu1) configuration: --prefix=/usr --extra-version=0ubuntu0.22.04.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libdav1d --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librabbitmq --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libsrt --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzimg --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-pocketsphinx --enable-librsvg --enable-libmfx --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared WARNING: library configuration mismatch avcodec configuration: --prefix=/usr --extra-version=0ubuntu0.22.04.1 --toolchain=hardened --libdir=/usr/lib/x86_64-linux-gnu --incdir=/usr/include/x86_64-linux-gnu --arch=amd64 --enable-gpl --disable-stripping --enable-gnutls --enable-ladspa --enable-libaom --enable-libass --enable-libbluray --enable-libbs2b --enable-libcaca --enable-libcdio --enable-libcodec2 --enable-libdav1d --enable-libflite --enable-libfontconfig --enable-libfreetype --enable-libfribidi --enable-libgme --enable-libgsm --enable-libjack --enable-libmp3lame --enable-libmysofa --enable-libopenjpeg --enable-libopenmpt --enable-libopus --enable-libpulse --enable-librabbitmq --enable-librubberband --enable-libshine --enable-libsnappy --enable-libsoxr --enable-libspeex --enable-libsrt --enable-libssh --enable-libtheora --enable-libtwolame --enable-libvidstab --enable-libvorbis --enable-libvpx --enable-libwebp --enable-libx265 --enable-libxml2 --enable-libxvid --enable-libzimg --enable-libzmq --enable-libzvbi --enable-lv2 --enable-omx --enable-openal --enable-opencl --enable-opengl --enable-sdl2 --enable-pocketsphinx --enable-librsvg --enable-libmfx --enable-libdc1394 --enable-libdrm --enable-libiec61883 --enable-chromaprint --enable-frei0r --enable-libx264 --enable-shared --enable-version3 --disable-doc --disable-programs --enable-libaribb24 --enable-libopencore_amrnb --enable-libopencore_amrwb --enable-libtesseract --enable-libvo_amrwbenc --enable-libsmbclient libavutil 56. 70.100 / 56. 70.100 libavcodec 58.134.100 / 58.134.100 libavformat 58. 76.100 / 58. 76.100 libavdevice 58. 13.100 / 58. 13.100 libavfilter 7.110.100 / 7.110.100 libswscale 5. 9.100 / 5. 9.100 libswresample 3. 9.100 / 3. 9.100 libpostproc 55. 9.100 / 55. 9.100 Unrecognized option '-version'. Error splitting the argument list: Option not found |
/usr/bin/firefox | Mozilla Firefox 130.0 |
/usr/bin/fish | fish, version 3.3.1 |
/usr/bin/flex | flex 2.6.4 |
/ext/bin/fscip | syntax: fscip fscip_param_file problem_file_name [-l <logfile>] [-q] [-sl <settings>] [-s <settings>] [-sr <root_settings>] [-w <prefix_warm>] [-sth <number>] [-fsol <solution_file>] [-isol <initial solution file] -l <logfile> : copy output into log file -q : suppress screen messages -sl <settings> : load parameter settings (.set) file for LC presolving -s <settings> : load parameter settings (.set) file for solvers -sr <root_settings> : load parameter settings (.set) file for root -w <prefix_warm> : warm start file prefix ( prefix_warm_nodes.gz and prefix_warm_solution.txt are read ) -sth <number> : the number of solver threads used -fsol <solution file> : specify output solution file -isol <intial solution file> : specify initial solution file |
/usr/bin/g++ | g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/g++-10 | g++-10 (Ubuntu 10.5.0-1ubuntu1~22.04) 10.5.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/g++-11 | g++-11 (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/ext/bin/gap | ┌───────┐ GAP 4.12.1 of 2022-10-20
│ GAP │ https://www.gap-system.org
└───────┘ Architecture: x86_64-pc-linux-gnu-default64-kv8
Configuration: gmp 6.2.1, GASMAN
Loading the library and packages ...
Packages: AClib 1.3.2, Alnuth 3.2.1, AtlasRep 2.1.6, AutoDoc 2022.10.20,
AutPGrp 1.11, Browse 1.8.18, CaratInterface 2.3.4, CRISP 1.4.5,
Cryst 4.1.25, CrystCat 1.1.10, CTblLib 1.3.4,
curlInterface 2.3.1, FactInt 1.6.3, FGA 1.4.0, Forms 1.2.9,
GAPDoc 1.6.6, genss 1.6.8, IO 4.8.0, IRREDSOL 1.4.3,
LAGUNA 3.9.5, orb 4.9.0, Polenta 1.3.10, Polycyclic 2.16,
PrimGrp 3.4.2, RadiRoot 2.9, recog 1.4.2, ResClasses 4.7.3,
SmallGrp 1.5, Sophus 1.27, SpinSym 1.5.2, TomLib 1.2.9,
TransGrp 3.6.3, utils 0.77
Try '??help' for help. See also '?copyright', '?cite' and '?authors'
[1m[34mgap> [0m[31m |
/usr/local/bin/gap-sage | ┌───────┐ GAP 4.12.2 of 2022-12-18 │ GAP │ https://www.gap-system.org └───────┘ Architecture: x86_64-pc-linux-gnu-default64-kv8 Configuration: gmp 6.2.1, GASMAN Loading the library and packages ... Packages: GAPDoc 1.6.6, PrimGrp 3.4.3, SmallGrp 1.5.1, TransGrp 3.6.3 Try '??help' for help. See also '?copyright', '?cite' and '?authors' [1m[34mgap> [0m[31m |
/ext/bin/gap3 | ######## Lehrstuhl D fuer Mathematik, RWTH Aachen
### #### ####### #########
## ## # ## ## # ##
## # # ## # ##
## # ## # # ##
#### ## ######### #######
##### ### Version 3 Release 4.4 18 Apr 97 #
######### # # Martin Schoenert
## Alice Niemeyer, Werner Nickel # Erzsebet Horvath
### Bettina Eick, Frank Celler, # Udo Polis
## # Johannes Meier, Alex Wegner, # Goetz Pfeiffer
## # Juergen Mnich, Thomas Breuer # Heiko Theissen
## # Hans U. Besche, Volkmar Felsch # Ansgar Kaup
## # Akos Seress, Alexander Hulpke, Thomas Bischops
## ##
###### For help enter: ?<return>
lib: 29 May 2017, src: 22 feb 2017, sys: linux gcc64
for this GAP3 distribution see webusers.imj-prg.fr/~jmichel/gap3
--- Loading package arep -------- version 1.0 of 1998 Jul 22 ----------------
(C) Sebastian Egner, Markus Pueschel -- Abstract REPresentations
--- Loading package guava ------- version 1.3 -------------------------------
(C) Jasper Cramwinckel, Erik Roijackers, Reinald Baart, Eric Minkes
--- Loading package autag ------- version of 1997 Jan -----------------------
--- Loading package cryst ------- version of 1997 ---------------------------
--- Loading package dce --------- version of 1995 ---------------------------
--- Loading package gliss ------- version 1.0 of 1996 Sep 27 ----------------
(C) Christof Noebauer -- Glissando: small semigroups and near rings
--- Loading package grim -------- version 1.0 -------------------------------
(C) [email protected] -- Groups of Rational and Integer Matrices
--- Loading package matrix ------ version 1.0 -------------------------------
(C) Frank Celler, Derek Holt, Charles Leedham-Green, Alice Niemeyer
Eamon O'Brien, Cheryl Praeger, Anthony Pye, Sarah Rees
--- Loading package monoid ------ version 2.2 -------------------------------
--- Loading package xmod -------- version 1.3.1 of 1997 Jan -----------------
(C) Chris Wensley, Murat Alp -- Crossed-modules, Cat1-groups
--- Loading package algebra ----- version of 2010 Oct -----------------------
(C) C'edric Bonnaf'e -- Finite dimensional algebras
--- Loading package specht ------ version 3.1 - unofficial (development) ----
Decomposition numbers of Hecke algebras of type A and q-Schur algebras.
(C) Andrew Mathas [email protected] Sydney
--- Loading package chevie ------ version of 2017 Jun 30 --------------------
If you use CHEVIE in your work please cite the authors as follows:
[Jean Michel] The development version of the CHEVIE package of GAP3
Journal of algebra 435 (2015) 308--336
[Meinolf Geck, Gerhard Hiss, Frank Luebeck, Gunter Malle, Goetz Pfeiffer]
CHEVIE -- a system for computing and processing generic character tables
Applicable Algebra in Engineering Comm. and Computing 7 (1996) 175--210
--- Loading package vkcurve ----- version 1.2 of 2009 Mar -------------------
(C) David Bessis, Jean Michel -- compute Pi_1 of hypersurface complements
gap> |
/usr/bin/gcc | gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/gcc-10 | gcc-10 (Ubuntu 10.5.0-1ubuntu1~22.04) 10.5.0 Copyright (C) 2020 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/gcc-11 | gcc-11 (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/geckodriver | 2024-09-30T11:19:32.407Z INFO geckodriver: Detected Geckodriver v0.35.0 to be latest 2024-09-30T11:19:32.408Z INFO geckodriver: Downloading Geckodriver from https://github.com/mozilla/geckodriver/releases/download/v0.35.0/geckodriver-v0.35.0-linux64.tar.gz geckodriver 0.35.0 (9f0a0036bea4 2024-08-03 07:11 +0000) The source code of this program is available from testing/geckodriver in https://hg.mozilla.org/mozilla-central. This program is subject to the terms of the Mozilla Public License 2.0. You can obtain a copy of the license at https://mozilla.org/MPL/2.0/. |
/usr/bin/gfortran | GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/gh | gh version 2.53.0 (2024-07-17) https://github.com/cli/cli/releases/tag/v2.53.0 |
/usr/bin/ghc | The Glorious Glasgow Haskell Compilation System, version 8.8.4 |
/ext/bin/giac | // Maximum number of parallel threads 8 // (c) 2001, 2021 B. Parisse & others 1.9.0 |
/usr/bin/git | git version 2.34.1 |
/usr/local/bin/git-trac | usage: git-trac [-h] [--debug] [--log LOG]
{create,checkout,search,fetch,pull,push,get,depends,print,browse,review,find,try,log,config,cheat-sheet,help}
...
The trac command extension for git
positional arguments:
{create,checkout,search,fetch,pull,push,get,depends,print,browse,review,find,try,log,config,cheat-sheet,help}
create Create new ticket
checkout Download branch
search Search trac
fetch Fetch branch from trac ticket
pull Get updates
push Upload changes
get Print trac page
depends Print trac dependencies
print Print trac page
browse Open trac page in browser
review Show code to review
find Find trac ticket from SHA1
try Try out trac ticket in "detached HEAD"
log Commit log for ticket
config Configure git-trac
cheat-sheet Show the git trac cheat sheet
help Show the git trac help
options:
-h show this help message and exit
--debug debug
--log LOG one of [DEBUG, INFO, ERROR, WARNING, CRITICAL] |
/usr/bin/gnat | GNAT 10.5.0 Copyright (C) 1996-2020, Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/gnatmake | GNATMAKE 10.5.0 Copyright (C) 1995-2020, Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/go | go version go1.18.1 linux/amd64 |
/usr/bin/google-chrome | Google Chrome 128.0.6613.137 |
/usr/bin/gp | GP/PARI CALCULATOR Version 2.13.3 (released)
amd64 running linux (x86-64/GMP-6.2.1 kernel) 64-bit version
compiled: Oct 25 2021, gcc version 11.2.0 (Ubuntu 11.2.0-10ubuntu1)
threading engine: pthread
(readline v8.1 disabled, extended help enabled) |
/usr/bin/gradle | Picked up _JAVA_OPTIONS: -Xms64m ------------------------------------------------------------ Gradle 8.3 ------------------------------------------------------------ Build time: 2023-08-17 07:06:47 UTC Revision: 8afbf24b469158b714b36e84c6f4d4976c86fcd5 Kotlin: 1.9.0 Groovy: 3.0.17 Ant: Apache Ant(TM) version 1.10.13 compiled on January 4 2023 JVM: 18.0.2-ea (Private Build 18.0.2-ea+9-Ubuntu-222.04) OS: Linux 5.15.0-1046-gcp amd64 |
/usr/bin/grass | GRASS GIS 7.8.7 Geographic Resources Analysis Support System (GRASS) is Copyright, 1999-2022 by the GRASS Development Team, and licensed under terms of the GNU General Public License (GPL) version >=2. This GRASS GIS 7.8.7 release is coordinated and produced by the GRASS Development Team with contributions from all over the world. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. |
/usr/bin/grepcidr | grepcidr 2.0 Copyright (C) 2004 - 2014 Jem E. Berkes <[email protected]> |
/usr/bin/gringo | gringo version 5.4.1 Address model: 64-bit libgringo version 5.4.1 Configuration: with Python 3.10.2, with Lua 5.4.3 License: The MIT License <https://opensource.org/licenses/MIT> |
/usr/bin/gst | GNU Smalltalk version 3.2.5 Copyright 2009 Free Software Foundation, Inc. Written by Steve Byrne ([email protected]) and Paolo Bonzini ([email protected]) GNU Smalltalk comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Smalltalk under the terms of the GNU General Public License. For more information, see the file named COPYING. Using default kernel path: /usr/share/gnu-smalltalk/kernel Using default image path: /usr/lib/gnu-smalltalk |
/usr/bin/guile | guile (GNU Guile) 3.0.7 Packaged by Debian (3.0.7-deb+3.0.7-1) Copyright (C) 2021 Free Software Foundation, Inc. License LGPLv3+: GNU LGPL 3 or later <http://gnu.org/licenses/lgpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. |
/usr/bin/gyoto | Gyoto 1.4.4
ABI compatibility version: 8
Copyright (c) 2011-2019 Frédéric Vincent, Thibaut Paumard,
Odele Straub and Frédéric Lamy.
GYOTO is distributed under the terms of the GPL v. 3 license.
We request that use of Gyoto in scientific publications be properly
acknowledged. Please cite:
GYOTO: a new general relativistic ray-tracing code,
F. H. Vincent, T. Paumard, E. Gourgoulhon & G. Perrin 2011,
Classical and Quantum Gravity 28, 225011 (2011) [arXiv:1109.4769]
|
/usr/bin/h5dump | h5dump: Version 1.10.7 |
/usr/bin/hardlink | hardlink from util-linux 2.37.2 |
/usr/bin/haskell-compiler | The Glorious Glasgow Haskell Compilation System, version 8.8.4 |
/usr/bin/haxe | 4.3.6 |
/usr/bin/haxelib | Unknown command --help
Haxe Library Manager 4.1.0 - (c)2006-2019 Haxe Foundation
Usage: haxelib [command] [options]
Basic
install : install a given library, or all libraries from a hxml file
update : update a single library (if given) or all installed libraries
remove : remove a given library/version
list : list all installed libraries
set : set the current version for a library
Information
search : list libraries matching a word
info : list information on a given library
user : list information on a given user
config : print the repository path
path : give paths to libraries' sources and necessary build definitions
libpath : returns the root path of a library
version : print the currently used haxelib version
help : display this list of options
Development
submit : submit or update a library package
register : register a new user
dev : set the development directory for a given library
git : use Git repository as library
hg : use Mercurial (hg) repository as library
Miscellaneous
setup : set the haxelib repository path
newrepo : create a new local repository
deleterepo : delete the local repository
convertxml : convert haxelib.xml file to haxelib.json
run : run the specified library with parameters
proxy : setup the Http proxy
Available switches
--flat : do not use --recursive cloning for git
--always : answer all questions with yes
--debug : run in debug mode, imply not --quiet
--quiet : print less messages, imply not --debug
--system : run bundled haxelib version instead of latest update
--skip-dependencies: do not install dependencies
--never : answer all questions with no
--global : force global repo if a local one exists |
/usr/bin/head | mglconv convert mgl script to image file (default PNG). Current version is 8.0.1 |
/usr/bin/heroku | › Warning: heroku update available from 8.11.4 to 8.11.5. heroku/8.11.4 linux-x64 node-v16.20.2 |
/usr/bin/hg | Mercurial Distributed SCM (version 6.1.1) (see https://mercurial-scm.org for more information) Copyright (C) 2005-2022 Olivia Mackall and others This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/hisat2 | /usr/bin/hisat2-align-s version 2.2.1
64-bit
Built on Debian
28 September 2021
Compiler: gcc version 11.2.0 (Ubuntu 11.2.0-7ubuntu2)
Options: -O3 -funroll-loops -g3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11
Sizeof {int, long, long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8} |
/usr/bin/htop | htop 3.0.5 |
/usr/bin/ijs | ijavascript 5.2.1 jmp 2.0.0 jp-kernel 2.0.0 nel 1.3.0 uuid 3.4.0 zeromq 5.3.1 |
/usr/bin/inkscape | Warning: Option --without-gui= is deprecated Inkscape 1.1.2 (0a00cf5339, 2022-02-04) |
/ext/bin/ipopt | Ipopt 3.14.16 (Linux x86_64), ASL(20160307) |
/ext/anaconda2022.05/bin/ipython | 8.14.0 |
/ext/miniforge2023/bin/ipython | 8.27.0 |
/usr/local/bin/ipython | 7.34.0 |
/usr/local/bin/ipython3 | 7.34.0 |
/usr/bin/irssi | irssi 1.2.3-1ubuntu4 (20210409 0011) |
/usr/bin/iverilog | Icarus Verilog version 11.0 (stable) () Copyright 1998-2020 Stephen Williams This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. Icarus Verilog Preprocessor version 11.0 (stable) () Copyright (c) 1999-2020 Stephen Williams ([email protected]) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. Icarus Verilog Parser/Elaborator version 11.0 (stable) () Copyright (c) 1998-2020 Stephen Williams ([email protected]) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. FLAGS DLL vvp.tgt vvp.tgt: Icarus Verilog VVP Code Generator 11.0 (stable) () Copyright (c) 2001-2020 Stephen Williams ([email protected]) This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
/usr/bin/jags | Welcome to JAGS 4.3.2 on Mon Sep 30 11:19:53 2024 JAGS is free software and comes with ABSOLUTELY NO WARRANTY Loading module: basemod: ok Loading module: bugs: ok |
/usr/bin/java | Picked up _JAVA_OPTIONS: -Xms64m openjdk version "18.0.2-ea" 2022-07-19 OpenJDK Runtime Environment (build 18.0.2-ea+9-Ubuntu-222.04) OpenJDK 64-Bit Server VM (build 18.0.2-ea+9-Ubuntu-222.04, mixed mode, sharing) |
/usr/bin/javac | Picked up _JAVA_OPTIONS: -Xms64m javac 18.0.2-ea |
/ext/bin/julia | julia version 1.10.4 |
/ext/bin/julia-1.10 | julia version 1.10.4 |
/ext/bin/julia-1.8 | julia version 1.8.4 |
/ext/bin/julia-1.9 | julia version 1.9.4 |
/usr/local/bin/jupyter-book | Jupyter Book : 1.0.2 External ToC : 1.0.1 MyST-Parser : 2.0.0 MyST-NB : 1.0.0 Sphinx Book Theme : 1.1.2 Jupyter-Cache : 0.6.1 NbClient : 0.6.3 |
/usr/local/bin/jupyter-lab | 4.2.5 |
/usr/local/bin/jupyter-nbconvert | 7.16.4 |
/usr/local/bin/jupyter-notebook | 6.5.7 |
/usr/local/bin/jupyterhub | 2.3.1 |
/usr/local/bin/jupytext | /usr/local/lib/python3.10/dist-packages/jupytext/cell_reader.py:20: UserWarning: Sphinx Gallery in version 0.13.0 is not supported by Jupytext. Please use sphinx-gallery<=0.7.0 instead. If that is an issue, feel free to report it at https://github.com/mwouts/jupytext/issues, or even better, prepare a PR to handle the new signature of sphinx_gallery.notebook.rst2md.
warnings.warn(
usage: jupytext [-h] [--from INPUT_FORMAT] [--to OUTPUT_FORMAT] [-o OUTPUT]
[--update] [--set-formats SET_FORMATS] [--sync]
[--paired-paths] [--format-options FORMAT_OPTIONS]
[--update-metadata UPDATE_METADATA] [--use-source-timestamp]
[--warn-only] [--test] [--test-strict] [--stop] [--pipe PIPE]
[--diff] [--diff-format DIFF_FORMAT] [--check CHECK]
[--pipe-fmt PIPE_FMT] [--set-kernel SET_KERNEL] [--execute]
[--run-path RUN_PATH] [--quiet] [--show-changes] [--version]
[--pre-commit] [--pre-commit-mode]
[notebooks ...]
Jupyter Notebooks as Markdown Documents, Julia, Python or R Scripts
positional arguments:
notebooks One or more notebook(s). Notebook is read from stdin
when this argument is empty. (default: None)
options:
-h, --help show this help message and exit
--from INPUT_FORMAT Jupytext format for the input(s). Inferred from the
file extension and content when missing. (default:
None)
--to OUTPUT_FORMAT The destination format: 'ipynb', 'markdown' or
'script', or a file extension: 'md', 'Rmd', 'jl',
'py', 'R', ..., 'auto' (script extension matching the
notebook language), or a combination of an extension
and a format name, e.g. md:markdown, md:myst,
md:pandoc or py:sphinx, py:percent, py:light,
py:nomarker, py:hydrogen. The default format for
scripts is the 'light' format, which uses few cell
markers (none when possible). Alternatively, a format
compatible with many editors is the 'percent' format,
which uses '# %%' as cell markers. The main formats
(markdown, light, percent) preserve notebooks and text
documents in a roundtrip. Use the --test and and
--test-strict commands to test the roundtrip on your
files. Read more about the available formats at
https://jupytext.readthedocs.io/en/latest/formats.html
(default: None)
-o OUTPUT, --output OUTPUT
Destination file. Defaults to the original file, with
prefix/suffix/extension changed according to the
destination format. Use '-' to print the notebook on
stdout. (default: None)
--update Preserve the output cells when the destination
notebook is an .ipynb file that already exists
(default: False)
--set-formats SET_FORMATS
Turn the notebook or text document to one or more
alternative representations with e.g. '--set-formats
ipynb,py:light'. The --set-formats option also
triggers the creation/update of all paired files
(default: None)
--sync, -s Synchronize the content of the paired representations
of the given notebook. Input cells are taken from the
file that was last modified, and outputs are read from
the ipynb file, if present. (default: False)
--paired-paths, -p List the locations of the alternative representations
for this notebook. (default: False)
--format-options FORMAT_OPTIONS, --opt FORMAT_OPTIONS
Set format options with e.g. '--opt
comment_magics=true' or '--opt
notebook_metadata_filter=-kernelspec'. (default: None)
--update-metadata UPDATE_METADATA
Update the notebook metadata with the desired
dictionary. Argument must be given in JSON format. For
instance, if you want to activate a pairing in the
generated file, use e.g. --update-metadata
'{"jupytext":{"formats":"ipynb,py:light"}}' See also
the --opt and --set-formats options for other ways to
operate on the Jupytext metadata. (default: {})
--use-source-timestamp
Set the modification timestamp of the output file(s)
equalto that of the source file, and keep the source
file and its timestamp unchanged. (default: False)
--warn-only, -w Only issue a warning and continue processing other
notebooks when the conversion of a given notebook
fails (default: False)
--test Test that the notebook is stable under a round trip
conversion, up to the expected changes (default:
False)
--test-strict Test that the notebook is strictly stable under a
round trip conversion (default: False)
--stop, -x In --test mode, stop on first round trip conversion
error, and report stack traceback (default: False)
--pipe PIPE Pipe the text representation (in format --pipe-fmt) of
the notebook into another program, and read the
notebook back. For instance, reformat your notebook
with: 'jupytext notebook.ipynb --pipe black' If you
want to reformat it and sync the paired
representation, execute: 'jupytext notebook.ipynb
--sync --pipe black' In case the program that you want
to execute does not accept pipes, use {} as a
placeholder for a temporary file name into which
jupytext will write the text representation of the
notebook, e.g.: jupytext notebook.ipynb --pipe 'black
{}' (default: None)
--diff, -d Show the differences between (the inputs) of two
notebooks (default: False)
--diff-format DIFF_FORMAT
The text format used to show differences in --diff
(default: None)
--check CHECK Pipe the text representation (in format --pipe-fmt) of
the notebook into another program, and test that the
returned value is non zero. For instance, test that
your notebook is pep8 compliant with: 'jupytext
notebook.ipynb --check flake8' or run pytest on your
notebook with: 'jupytext notebook.ipynb --check
pytest' In case the program that you want to execute
does not accept pipes, use {} as a placeholder for a
temporary file name into which jupytext will write the
text representation of the notebook, e.g.: jupytext
notebook.ipynb --check 'pytest {}' (default: None)
--pipe-fmt PIPE_FMT The format in which the notebook should be piped to
other programs, when using the --pipe and/or --check
commands. (default: auto:percent)
--set-kernel SET_KERNEL, -k SET_KERNEL
Set the kernel with the given name on the notebook.
Use '--set-kernel -' to set a kernel matching the
current environment on Python notebooks, and matching
the notebook language otherwise (get the list of
available kernels with 'jupyter kernelspec list')
(default: None)
--execute Execute the notebook with the given kernel. In the
--pre-commit-mode, the notebook is executed only if a
code cell changed, or if some execution outputs are
missing or not ordered. (default: False)
--run-path RUN_PATH Execute the notebook at the given path (defaults to
the notebook parent directory) (default: None)
--quiet, -q Quiet mode: do not comment about files being updated
or created (default: False)
--show-changes Display the diff for each output file (default: False)
--version, -v Show jupytext's version number and exit (default:
False)
--pre-commit Ignore the notebook argument, and instead apply
Jupytext on the notebooks found in the git index,
which have an extension that matches the (optional)
--from argument. (default: False)
--pre-commit-mode This is a mode that is compatible with the pre-commit
framework. In this mode, --sync won't use timestamp
but instead will determines the source notebook as the
element of the pair that is added to the git index. An
alert is raised if multiple inconsistent
representations are in the index. It also raises an
alert after updating the paired files or outputs if
those files need to be added to the index. Finally,
filepaths that aren't in the source format you are
trying to convert from are ignored. (default: False) |
/usr/bin/jurism | Jurism Jurism 6.0.22m6, Copyright (c) 2006-2020 Contributors |
/usr/bin/latex | pdfTeX 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) kpathsea version 6.3.4/dev Copyright 2021 Han The Thanh (pdfTeX) et al. There is NO warranty. Redistribution of this software is covered by the terms of both the pdfTeX copyright and the Lesser GNU General Public License. For more information about these matters, see the file named COPYING and the pdfTeX source. Primary author of pdfTeX: Han The Thanh (pdfTeX) et al. Compiled with libpng 1.6.37; using libpng 1.6.37 Compiled with zlib 1.2.11; using zlib 1.2.11 Compiled with xpdf version 4.03 |
/usr/bin/latexmk | Latexmk, John Collins, 20 November 2021. Version 4.76 |
/ext/bin/lean | Lean (version 3.11.0, commit fb3f3e88be8a, Release) |
/usr/bin/lfm | usage: lfm [-h] [-d] [-w] [--restore-config] [--restore-keys]
[--restore-theme] [--delete-history]
[path1] [path2]
lfm v3.0 - (C) 2001-17, by Iñigo Serna <[email protected]>
positional arguments:
path1 Path to show in left pane (default: ".")
path2 Path to show in right pane (default: ".")
options:
-h, --help show this help message and exit
-d, --debug Enable debug level in log file
-w, --use-wide-chars Enable support for wide chars
--restore-config Restore default configuration
--restore-keys Restore default key bindings
--restore-theme Restore default theme
--delete-history Delete history
'Last File Manager' is a powerful file manager for UNIX console.
It has a curses interface and it's written in Python version 3.4+.
Released under GNU Public License, read COPYING file for more details. |
/usr/bin/libreoffice | LibreOffice 7.3.7.2 30(Build:2) |
/usr/bin/lilypond | GNU LilyPond 2.22.1 Copyright (c) 1996--2021 by Han-Wen Nienhuys <[email protected]> Jan Nieuwenhuizen <[email protected]> and others. This program is free software. It is covered by the GNU General Public License and you are welcome to change it and/or distribute copies of it under certain conditions. Invoke as `lilypond --warranty' for more information. |
/usr/bin/lneato | lneato version 95 (04-18-95) Error: Can't open display: |
/usr/bin/lrzip | lrzip version 0.651 |
/usr/bin/lsb_release | 22.04 |
/usr/bin/lua | Lua 5.2.4 Copyright (C) 1994-2015 Lua.org, PUC-Rio |
/usr/bin/lua5.4 | Lua 5.4.4 Copyright (C) 1994-2022 Lua.org, PUC-Rio |
/usr/bin/luatex | This is LuaTeX, Version 1.14.0 (TeX Live 2022/dev/Debian) Execute 'luatex --credits' for credits and version details. There is NO warranty. Redistribution of this software is covered by the terms of the GNU General Public License, version 2 or (at your option) any later version. For more information about these matters, see the file named COPYING and the LuaTeX source. LuaTeX is Copyright 2021 Taco Hoekwater and the LuaTeX Team. |
/usr/bin/lzma | xz (XZ Utils) 5.2.5 liblzma 5.2.5 |
/usr/bin/M2 | 1.24.05 |
/usr/bin/m4 | m4 (GNU M4) 1.4.18 Copyright (C) 2016 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Rene' Seindal. |
/ext/bin/macs2 | macs2 2.2.9.1 |
/ext/bin/mageck | 0.5.9.5 |
/usr/bin/make | GNU Make 4.3 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. |
/usr/bin/markdown | This is Markdown, version 1.0.1. Copyright 2004 John Gruber http://daringfireball.net/projects/markdown/ |
/usr/bin/materialized | materialized v0.26.6 (5ad960ec7) |
/ext/bin/mathics | mathics 6.0.1 |
/usr/bin/maxima | Maxima 5.45.1 |
/usr/local/bin/maxima-sage | ;;; Loading #P"/usr/lib/x86_64-linux-gnu/ecl-21.2.1/sb-bsd-sockets.fas" ;;; Loading #P"/usr/lib/x86_64-linux-gnu/ecl-21.2.1/sockets.fas" Maxima 5.46.0 |
/usr/bin/mc | GNU Midnight Commander 4.8.27 Built with GLib 2.68.4 Built with S-Lang 2.3.2 with terminfo database With builtin Editor and Aspell support With subshell support as default With support for background operations With mouse support on xterm and Linux console With support for X11 events With internationalization support With multiple codepages support With ext2fs attributes support Virtual File Systems: cpiofs, tarfs, sfs, extfs, ext2undelfs, ftpfs, sftpfs, fish Data types: char: 8; int: 32; long: 64; void *: 64; size_t: 64; off_t: 64; |
/usr/local/bin/meson | 0.63.0 |
/usr/bin/mono | Mono JIT compiler version 6.8.0.105 (Debian 6.8.0.105+dfsg-3.2 Wed Jun 30 05:34:49 UTC 2021) Copyright (C) 2002-2014 Novell, Inc, Xamarin Inc and Contributors. www.mono-project.com TLS: __thread SIGSEGV: altstack Notifications: epoll Architecture: amd64 Disabled: none Misc: softdebug Interpreter: yes LLVM: supported, not enabled. Suspend: hybrid GC: sgen (concurrent by default) |
/usr/bin/mpiexec | mpiexec (OpenRTE) 4.1.2 Report bugs to http://www.open-mpi.org/community/help/ |
/usr/local/bin/mzcli | Version: 3.0.0 |
/usr/bin/nano | GNU nano, version 6.2 (C) 1999-2011, 2013-2022 Free Software Foundation, Inc. (C) 2014-2022 the contributors to nano Compiled options: --disable-libmagic --enable-utf8 |
/usr/local/bin/nasm | NASM version 2.15.05 compiled on Sep 13 2022 |
/usr/local/bin/nbdime | 4.0.2 |
/usr/bin/neofetch | Neofetch 7.1.0 |
/usr/bin/nettle-hash | nettle-hash (nettle 3.7.3) |
/ext/bin/nim | Nim Compiler Version 1.6.10 [Linux: amd64] Compiled at 2022-11-21 Copyright (c) 2006-2021 by Andreas Rumpf git hash: f1519259f85cbdf2d5ff617c6a5534fcd2ff6942 active boot switches: -d:release |
/usr/local/bin/ninja | 1.10.2.git.kitware.jobserver-1 |
/usr/bin/nnn | 4.3 |
/home/user/bin/node | v18.17.1 |
/usr/local/bin/notedown | 1.5.1 |
/home/user/bin/npm | 10.8.3 |
/usr/bin/nvim | NVIM v0.6.1 Build type: Release LuaJIT 2.1.0-beta3 Compiled by [email protected] Features: +acl +iconv +tui See ":help feature-compile" system vimrc file: "$VIM/sysinit.vim" fall-back for $VIM: "/usr/share/nvim" Run :checkhealth for more info |
/usr/bin/ocaml | The OCaml toplevel, version 4.13.1 |
/usr/local/bin/octave | GNU Octave, version 8.2.0 Copyright (C) 1993-2023 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/usr/local/bin/octave-7.3.0 | GNU Octave, version 7.3.0 Copyright (C) 1993-2022 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/usr/local/bin/octave-8.2.0 | GNU Octave, version 8.2.0 Copyright (C) 1993-2023 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/usr/local/bin/octave-cli | GNU Octave, version 8.2.0 Copyright (C) 1993-2023 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/usr/local/bin/octave-cli-7.3.0 | GNU Octave, version 7.3.0 Copyright (C) 1993-2022 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/usr/local/bin/octave-cli-8.2.0 | GNU Octave, version 8.2.0 Copyright (C) 1993-2023 The Octave Project Developers. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Octave was configured for "x86_64-pc-linux-gnu". Additional information about Octave is available at https://www.octave.org. Please contribute if you find this software useful. For more information, visit https://www.octave.org/get-involved.html Read https://www.octave.org/bugs.html to learn how to submit bug reports. |
/ext/bin/ok | okpy==v1.18.1 |
/usr/bin/oligotm | USAGE: oligotm OPTIONS oligo
where oligo is a DNA sequence of between 2 and 36 bases
and
OPTIONS can include any of the the following:
-mv monovalent_conc - concentration of monovalent cations in mM, by default 50mM
-dv divalent_conc - concentration of divalent cations in mM, by default 1.5mM
-n dNTP_conc - concentration of deoxynycleotide triphosphate in mM, by default 0.6mM
-d dna_conc - concentration of DNA strands in nM, by default 50nM
-tp [0|1] - Specifies the table of thermodynamic parameters and
the method of melting temperature calculation:
0 Breslauer et al., 1986 and Rychlik et al., 1990
(used by primer3 up to and including release 1.1.0).
1 Use nearest neighbor parameters from SantaLucia 1998
*This is the default and recommended value*
-sc [0..2] - Specifies salt correction formula for the melting
temperature calculation
0 Schildkraut and Lifson 1965, used by primer3 up to
and including release 1.1.0.
1 SantaLucia 1998
*This is the default and recommended value*
2 Owczarzy et al., 2004
Prints oligo's melting temperature on stdout. |
/usr/bin/opam | 2.1.2 |
/usr/bin/openscad | OpenSCAD version 2021.01 |
/usr/bin/pandoc | pandoc 3.4 Features: +server +lua Scripting engine: Lua 5.4 User data directory: /home/user/.local/share/pandoc Copyright (C) 2006-2024 John MacFarlane. Web: https://pandoc.org This is free software; see the source for copying conditions. There is no warranty, not even for merchantability or fitness for a particular purpose. |
/usr/local/bin/papermill | 2.3.4 from /usr/local/lib/python3.10/dist-packages/papermill/cli.py (3.10.12) |
/usr/bin/pdflatex | pdfTeX 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) kpathsea version 6.3.4/dev Copyright 2021 Han The Thanh (pdfTeX) et al. There is NO warranty. Redistribution of this software is covered by the terms of both the pdfTeX copyright and the Lesser GNU General Public License. For more information about these matters, see the file named COPYING and the pdfTeX source. Primary author of pdfTeX: Han The Thanh (pdfTeX) et al. Compiled with libpng 1.6.37; using libpng 1.6.37 Compiled with zlib 1.2.11; using zlib 1.2.11 Compiled with xpdf version 4.03 |
/usr/bin/pdftk | Picked up _JAVA_OPTIONS: -Xms64m pdftk port to java 3.2.2 a Handy Tool for Manipulating PDF Documents Copyright (c) 2017-2018 Marc Vinyals - https://gitlab.com/pdftk-java/pdftk Copyright (c) 2003-2013 Steward and Lee, LLC. pdftk includes a modified version of the iText library. Copyright (c) 1999-2009 Bruno Lowagie, Paulo Soares, et al. This is free software; see the source code for copying conditions. There is NO warranty, not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/bin/pdftotext | pdftotext version 22.02.0 Copyright 2005-2022 The Poppler Developers - http://poppler.freedesktop.org Copyright 1996-2011 Glyph & Cog, LLC |
/usr/bin/perl | This is perl 5, version 34, subversion 0 (v5.34.0) built for x86_64-linux-gnu-thread-multi (with 60 registered patches, see perl -V for more detail) Copyright 1987-2021, Larry Wall Perl may be copied only under the terms of either the Artistic License or the GNU General Public License, which may be found in the Perl 5 source kit. Complete documentation for Perl, including FAQ lists, should be found on this system using "man perl" or "perldoc perl". If you have access to the Internet, point your browser at http://www.perl.org/, the Perl Home Page. |
/usr/bin/perldoc | Perldoc v3.2801, under perl v5.034000 for linux |
/usr/bin/phc | PHCv2.4.85 released 2020-06-30 |
/usr/bin/php | PHP 8.1.2-1ubuntu2.18 (cli) (built: Jun 14 2024 15:52:55) (NTS)
Copyright (c) The PHP Group
Zend Engine v4.1.2, Copyright (c) Zend Technologies
with Zend OPcache v8.1.2-1ubuntu2.18, Copyright (c), by Zend Technologies |
/ext/bin/phylip | Starting main running main ['/ext/bin/phylip', 'test'] /ext/miniforge2023/share/phylip-3.697-0/exe testing dnapars... passed; cleaning up testing dnaml... passed; cleaning up testing dnadist... passed; cleaning up testing dnapenny... passed; cleaning up testing dnacomp... passed; cleaning up testing dnamlk... passed; cleaning up testing protpars... passed; cleaning up testing protdist... passed; cleaning up testing proml... passed; cleaning up testing promlk... passed; cleaning up testing pars... passed; cleaning up testing penny... passed; cleaning up testing dollop... passed; cleaning up testing dolpenny... passed; cleaning up testing clique... passed; cleaning up testing mix... passed; cleaning up testing restml... passed; cleaning up testing restdist... passed; cleaning up testing fitch... passed; cleaning up testing kitsch... passed; cleaning up testing neighbor... passed; cleaning up testing drawtree... passed; cleaning up testing drawgram... passed; cleaning up |
/usr/bin/pigz | pigz 2.6 |
/usr/local/bin/pip | pip 24.2 from /usr/local/lib/python3.10/dist-packages/pip (python 3.10) |
/usr/local/bin/pip-upgrade | 1.4.15 |
/usr/local/bin/pip3 | pip 24.2 from /usr/local/lib/python3.10/dist-packages/pip (python 3.10) |
/usr/local/bin/pipenv | pipenv, version 2024.0.1 |
/ext/bin/plink | @----------------------------------------------------------@ | PLINK! | v1.07 | 10/Aug/2009 | |----------------------------------------------------------| | (C) 2009 Shaun Purcell, GNU General Public License, v2 | |----------------------------------------------------------| | For documentation, citation & bug-report instructions: | | http://pngu.mgh.harvard.edu/purcell/plink/ | @----------------------------------------------------------@ Skipping web check... [ --noweb ] Writing this text to log file [ plink.log ] Analysis started: Mon Sep 30 11:21:02 2024 Options in effect: --noweb Before frequency and genotyping pruning, there are 0 SNPs 0 founders and 0 non-founders found 0 SNPs failed missingness test ( GENO > 1 ) 0 SNPs failed frequency test ( MAF < 0 ) After frequency and genotyping pruning, there are 0 SNPs ERROR: Stopping as there are no SNPs left for analysis |
/usr/bin/pm2 | pm2 launched in no-daemon mode (you can add DEBUG="*" env variable to get more messages) 2024-09-30T11:21:03: PM2 log: Launching in no daemon mode 5.4.2 |
/usr/bin/pngnq | pngnq 1.0 Compiled with libpng 1.6.23; using libpng 1.6.37. Compiled with zlib 1.2.8; using zlib 1.2.11. |
/usr/bin/pnpm | 9.9.0 |
/usr/local/bin/poetry | Poetry (version 1.8.3) |
/usr/bin/polymake | polymake version 4.4 Copyright (c) 1997-2021 Ewgenij Gawrilow, Michael Joswig, and the polymake team Technische Universität Berlin, Germany https://polymake.org This is free software licensed under GPL; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/home/user/bin/postgres | postgres (PostgreSQL) 15.8 (Ubuntu 15.8-1.pgdg22.04+1) |
/usr/local/bin/pretext | 2.6.2 |
/usr/bin/prettier | 3.3.3 |
/usr/bin/primecount | primecount 7.2, <https://github.com/kimwalisch/primecount> Copyright (C) 2013 - 2021 Kim Walisch BSD 2-Clause License <https://opensource.org/licenses/BSD-2-Clause> |
/usr/bin/primer3_core |
Copyright (c) 1996-2019
Whitehead Institute for Biomedical Research, Steve Rozen
(http://purl.com/STEVEROZEN/), Andreas Untergasser and Helen Skaletsky
All rights reserved.
This file is part of the primer3 suite and libraries.
The primer3 suite and libraries are free software;
you can redistribute them and/or modify them under the terms
of the GNU General Public License as published by the Free
Software Foundation; either version 2 of the License, or (at
your option) any later version.
This software is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this software (file gpl-2.0.txt in the source
distribution); if not, write to the Free Software
Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
USAGE: primer3_core [--format_output] [--default_version=1|--default_version=2] [--io_version=4] [--p3_settings_file=<file_path>] [--echo_settings_file] [--strict_tags] [--output=<file_path>] [--error=<file_path>] [input_file]
This is primer3 (libprimer3 release 2.5.0)
Input can also be provided on standard input.
For example:
$ primer3_core < my_input_file |
/usr/bin/primesieve | primesieve 7.8, <https://github.com/kimwalisch/primesieve> Copyright (C) 2010 - 2022 Kim Walisch BSD 2-Clause License <https://opensource.org/licenses/BSD-2-Clause> |
/usr/bin/prolog | SWI-Prolog version 8.4.2 for x86_64-linux |
/usr/bin/protoc | libprotoc 3.12.4 |
/usr/local/bin/py.test | pytest 8.2.2 |
/usr/local/bin/pytest | pytest 8.2.2 |
/ext/anaconda2022.05/bin/python | Python 3.9.15 |
/ext/miniforge2023/bin/python | Python 3.10.14 |
/usr/bin/python2 | Python 2.7.18 |
/ext/anaconda2022.05/bin/python3 | Python 3.9.15 |
/ext/bin/python3-sage | Python 3.12.4 |
/ext/miniforge2023/bin/python3 | Python 3.10.14 |
/usr/bin/python3 | Python 3.10.12 |
/usr/bin/pythontex | PythonTeX 0.18 |
/usr/bin/pythontex3 | PythonTeX 0.18 |
/usr/local/bin/pytype | 2024.04.11 |
/usr/bin/qgis | QGIS 3.38.2-Grenoble 'Grenoble' (130c432394e) |
/usr/local/bin/quarto | 1.5.57 |
/usr/bin/R | R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see https://www.gnu.org/licenses/. |
/usr/local/bin/R-sage | R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under the terms of the GNU General Public License versions 2 or 3. For more information about these matters see https://www.gnu.org/licenses/. |
/ext/bin/RRA | RRA - Robust Rank Aggreation v 0.5.9. usage: -i <input data file>. Format: <item id> <group id> <list id> <value> [<probability>] [<chosen>] -o <output file>. Format: <group id> <number of items in the group> <lo-value> <false discovery rate> -p <maximum percentile>. RRA only consider the items with percentile smaller than this parameter. Default=0.1 -P <minimum percentile>. RRA only consider the items with percentile greater than this parameter. Default=-1.0 --control <control_sgrna list>. A list of control sgRNA names. --permutation <int>. The number of rounds of permutation. Increase this value if the number of genes is small. Default 100. --no-permutation-by-group. By default, gene permutation is performed separately, by their number of sgRNAs. Turning this option will perform permutation on all genes together. This makes the program faster, but the p value estimation is accurate only if the number of sgRNAs per gene is approximately the same. --skip-gene <gene_name>. Genes to skip from doing permutation. Specify it multiple times if you need to skip more than 1 genes. --min-percentage-goodsgrna <min percentage>. Filter genes that have too few percentage of 'good sgrnas', or sgrnas that fall below the -p threshold. Must be a number between 0-1. Default 0 (do not filter genes). --min-number-goodsgrna <min number>. Filter genes that have too few number of 'good sgrnas', or sgrnas that fall below the -p threshold. Must be an integer. Default 0 (do not filter genes). --max-sgrnapergene-permutation <max number>. Only permute genes by group if the number of sgRNAs per gene is smaller than this number. This will save a lot of time if some regions are targeted by a large number of sgRNAs (usually hundreds). Must be an integer. Default 100. example: RRA -i input.txt -o output.txt -p 0.1 |
/usr/bin/racket | Welcome to Racket v8.6 [cs]. |
/usr/bin/ranger | ranger version: ranger 1.9.3 Python version: 3.10.12 (main, Jul 29 2024, 16:56:48) [GCC 11.4.0] Locale: en_US.UTF-8 |
/usr/bin/rclone | rclone v1.63.1 - os/version: ubuntu 22.04 (64 bit) - os/kernel: 5.15.0-1046-gcp (x86_64) - os/type: linux - os/arch: amd64 - go/version: go1.20.6 - go/linking: static - go/tags: none |
/usr/bin/rdfind | This is rdfind version 1.5.0 |
/usr/bin/reveal-md | 6.1.2 |
/usr/bin/rg | ripgrep 13.0.0 -SIMD -AVX (compiled) +SIMD +AVX (runtime) |
/usr/bin/ros | roswell 21.10.14.111(NO-GIT-REVISION) |
/usr/bin/Rscript | Rscript (R) version 4.4.1 (2024-06-14) |
/ext/bin/rstudio | RStudio is a trademarks of RStudio, Inc. CoCalc provides RStudio in unmodified form supplied by RStudio, Inc. primarily to foster the use of R or RStudio products in teaching for internal use in courses. RStudio, Inc. is in no way affiliated with CoCalc. Do not use RStudio in CoCalc if your use is not covered under Automatic Permitted Use: https://www.rstudio.com/about/trademark/. Launching RStudio... [3130:0930/112145.084195:ERROR:bus.cc(399)] Failed to connect to the bus: Failed to connect to socket /run/dbus/system_bus_socket: No such file or directory 2023.06.2+561 |
/usr/bin/rsync | rsync version 3.2.7 protocol version 31
Copyright (C) 1996-2022 by Andrew Tridgell, Wayne Davison, and others.
Web site: https://rsync.samba.org/
Capabilities:
64-bit files, 64-bit inums, 64-bit timestamps, 64-bit long ints,
socketpairs, symlinks, symtimes, hardlinks, hardlink-specials,
hardlink-symlinks, IPv6, atimes, batchfiles, inplace, append, ACLs,
xattrs, optional secluded-args, iconv, prealloc, stop-at, no crtimes
Optimizations:
SIMD-roll, no asm-roll, openssl-crypto, no asm-MD5
Checksum list:
xxh128 xxh3 xxh64 (xxhash) md5 md4 sha1 none
Compress list:
zstd lz4 zlibx zlib none
Daemon auth list:
sha512 sha256 sha1 md5 md4
rsync comes with ABSOLUTELY NO WARRANTY. This is free software, and you
are welcome to redistribute it under certain conditions. See the GNU
General Public Licence for details. |
/usr/bin/ruby | ruby 3.0.2p107 (2021-07-07 revision 0db68f0233) [x86_64-linux-gnu] |
/usr/bin/run-one | x |
/ext/bin/rustc | rustc 1.71.1 (eb26296b5 2023-08-03) |
/ext/bin/rustfmt | rustfmt 1.5.2-stable (eb26296 2023-08-03) |
/ext/bin/rustup | rustup 1.26.0 (5af9b9484 2023-04-05) info: This is the version for the rustup toolchain manager, not the rustc compiler. info: The currently active `rustc` version is `rustc 1.71.1 (eb26296b5 2023-08-03)` |
/usr/bin/rvim | VIM - Vi IMproved 8.2 (2019 Dec 12, compiled Aug 27 2024 05:34:22) Included patches: 1-16, 647, 17-579, 1969, 580-647, 678, 648-1848, 4975, 5016, 5023, 5072, 2068, 1849-1854, 1857, 1855-1857, 1331, 1858, 1858-1859, 1873, 1860-1969, 1992, 1970-1992, 2010, 1993-2068, 2106, 2069-2106, 2108, 2107-2109, 2109-3995, 4563, 4646, 4774, 4895, 4899, 4901, 4919, 213, 1840, 1846-1847, 2110-2112, 2121 Modified by [email protected] Compiled by [email protected] Huge version with GTK3 GUI. Features included (+) or not (-): +acl +file_in_path +mouse_urxvt -tag_any_white +arabic +find_in_path +mouse_xterm +tcl +autocmd +float +multi_byte +termguicolors +autochdir +folding +multi_lang +terminal -autoservername -footer -mzscheme +terminfo +balloon_eval +fork() +netbeans_intg +termresponse +balloon_eval_term +gettext +num64 +textobjects +browse -hangul_input +packages +textprop ++builtin_terms +iconv +path_extra +timers +byte_offset +insert_expand +perl +title +channel +ipv6 +persistent_undo +toolbar +cindent +job +popupwin +user_commands +clientserver +jumplist +postscript +vartabs +clipboard +keymap +printer +vertsplit +cmdline_compl +lambda +profile +vim9script +cmdline_hist +langmap -python +viminfo +cmdline_info +libcall +python3 +virtualedit +comments +linebreak +quickfix +visual +conceal +lispindent +reltime +visualextra +cryptv +listcmds +rightleft +vreplace +cscope +localmap +ruby +wildignore +cursorbind +lua +scrollbind +wildmenu +cursorshape +menu +signs +windows +dialog_con_gui +mksession +smartindent +writebackup +diff +modify_fname +sodium +X11 +digraphs +mouse +sound -xfontset +dnd +mouseshape +spell +xim -ebcdic +mouse_dec +startuptime +xpm +emacs_tags +mouse_gpm +statusline +xsmp_interact +eval -mouse_jsbterm -sun_workshop +xterm_clipboard +ex_extra +mouse_netterm +syntax -xterm_save +extra_search +mouse_sgr +tag_binary -farsi -mouse_sysmouse -tag_old_static system vimrc file: "$VIM/vimrc" user vimrc file: "$HOME/.vimrc" 2nd user vimrc file: "~/.vim/vimrc" user exrc file: "$HOME/.exrc" system gvimrc file: "$VIM/gvimrc" user gvimrc file: "$HOME/.gvimrc" 2nd user gvimrc file: "~/.vim/gvimrc" defaults file: "$VIMRUNTIME/defaults.vim" system menu file: "$VIMRUNTIME/menu.vim" fall-back for $VIM: "/usr/share/vim" Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -DFEAT_GUI_GTK -pthread -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -g -O2 -ffile-prefix-map=/build/vim-v7nC4l/vim-8.2.3995=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 Linking: gcc -L. -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -fstack-protector-strong -rdynamic -Wl,-export-dynamic -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o vim -lgtk-3 -lgdk-3 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -latk-1.0 -lcairo-gobject -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lSM -lICE -lXpm -lXt -lX11 -lXdmcp -lSM -lICE -lm -ltinfo -lselinux -lcanberra -lsodium -lacl -lattr -lgpm -L/usr/lib -llua5.2 -Wl,-E -fstack-protector-strong -L/usr/local/lib -L/usr/lib/x86_64-linux-gnu/perl/5.34/CORE -lperl -ldl -lm -lpthread -lcrypt -L/usr/lib/python3.10/config-3.10-x86_64-linux-gnu -lpython3.10 -lcrypt -ldl -lm -lm -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -lruby-3.0 -lm -L/usr/lib |
/ext/bin/sage | SageMath version 10.4, Release Date: 2024-07-19 |
/ext/bin/sage-10.0 | SageMath version 10.0, Release Date: 2023-05-20 |
/ext/bin/sage-10.1 | SageMath version 10.1, Release Date: 2023-08-20 |
/ext/bin/sage-10.2 | SageMath version 10.2, Release Date: 2023-12-03 |
/ext/bin/sage-10.3 | SageMath version 10.3, Release Date: 2024-03-19 |
/ext/bin/sage-10.4 | SageMath version 10.4, Release Date: 2024-07-19 |
/ext/bin/sage-9.6 | SageMath version 9.6, Release Date: 2022-05-15 |
/ext/bin/sage-9.7 | SageMath version 9.7, Release Date: 2022-09-19 |
/ext/bin/sage-9.8 | SageMath version 9.8, Release Date: 2023-02-11 |
/ext/bin/samtools | samtools 1.20
Using htslib 1.20
Copyright (C) 2024 Genome Research Ltd.
Samtools compilation details:
Features: build=configure curses=yes
CC: /opt/conda/conda-bld/samtools_1720645213030/_build_env/bin/x86_64-conda-linux-gnu-cc
CPPFLAGS: -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /ext/miniforge2023/include
CFLAGS: -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /ext/miniforge2023/include -fdebug-prefix-map=/opt/conda/conda-bld/samtools_1720645213030/work=/usr/local/src/conda/samtools-1.20 -fdebug-prefix-map=/ext/miniforge2023=/usr/local/src/conda-prefix
LDFLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/ext/miniforge2023/lib -Wl,-rpath-link,/ext/miniforge2023/lib -L/ext/miniforge2023/lib
HTSDIR:
LIBS:
CURSES_LIB: -ltinfow -lncursesw
HTSlib compilation details:
Features: build=configure libcurl=yes S3=yes GCS=yes libdeflate=yes lzma=yes bzip2=yes plugins=yes plugin-path=/ext/miniforge2023/libexec/htslib htscodecs=1.6.0
CC: /opt/conda/conda-bld/htslib_1713198294040/_build_env/bin/x86_64-conda-linux-gnu-cc
CPPFLAGS: -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /ext/miniforge2023/include
CFLAGS: -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /ext/miniforge2023/include -fdebug-prefix-map=/opt/conda/conda-bld/htslib_1713198294040/work=/usr/local/src/conda/htslib-1.20 -fdebug-prefix-map=/ext/miniforge2023=/usr/local/src/conda-prefix -fvisibility=hidden
LDFLAGS: -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,/ext/miniforge2023/lib -Wl,-rpath-link,/ext/miniforge2023/lib -L/ext/miniforge2023/lib -fvisibility=hidden -rdynamic
HTSlib URL scheme handlers present:
built-in: preload, data, file
S3 Multipart Upload: s3w, s3w+https, s3w+http
Amazon S3: s3+https, s3+http, s3
libcurl: imaps, pop3, gophers, http, smb, gopher, sftp, ftps, imap, smtp, wss, ws, smtps, rtsp, scp, ftp, telnet, mqtt, https, smbs, tftp, pop3s, dict
Google Cloud Storage: gs+http, gs+https, gs
crypt4gh-needed: crypt4gh
mem: mem |
/usr/bin/sbcl | SBCL 2.1.11.debian |
/usr/bin/scala | Picked up _JAVA_OPTIONS: -Xms64m Welcome to Scala 2.11.12 (OpenJDK 64-Bit Server VM, Java 18.0.2-ea). Type in expressions for evaluation. Or try :help. scala> :quit |
/usr/bin/scheme | MIT/GNU Scheme 11.2 Copyright (C) 2020 Massachusetts Institute of Technology This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Image saved on Thursday March 17, 2022 at 6:50:34 PM Release 11.2 || SF || LIAR/x86-64 Pulvis et umbra sumus. |
/usr/bin/scilab-cli-bin | Scilab version "6.1.1.988271013" scilab-branch-6.1 |
/ext/bin/scip | SCIP version 8.0.3 [precision: 8 byte] [memory: block] [mode: optimized] [LP solver: Soplex 6.0.3] [GitHash: 62fab8a2e3] Copyright (C) 2002-2022 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB) External libraries: Soplex 6.0.3 Linear Programming Solver developed at Zuse Institute Berlin (soplex.zib.de) [GitHash: f900e3d0] CppAD 20180000.0 Algorithmic Differentiation of C++ algorithms developed by B. Bell (github.com/coin-or/CppAD) ZLIB 1.2.11 General purpose compression library by J. Gailly and M. Adler (zlib.net) GMP 6.2.1 GNU Multiple Precision Arithmetic Library developed by T. Granlund (gmplib.org) ZIMPL 3.5.3 Zuse Institute Mathematical Programming Language developed by T. Koch (zimpl.zib.de) AMPL/MP 4e2d45c4 AMPL .nl file reader library (github.com/ampl/mp) PaPILO 2.1.2 parallel presolve for integer and linear optimization (github.com/scipopt/papilo) [GitHash: 2fe2543] bliss 0.77 Computing Graph Automorphism Groups by T. Junttila and P. Kaski (www.tcs.hut.fi/Software/bliss/) Ipopt 3.13.2 Interior Point Optimizer developed by A. Waechter et.al. (github.com/coin-or/Ipopt) Compiler: gcc 9.4.0 Build options: ARCH=x86_64 OSTYPE=Linux-4.19.0-21-amd64 COMP=GNU 9.4.0 BUILD=Release DEBUGSOL=OFF EXPRINT=cppad SYM=bliss GMP=ON IPOPT=ON WORHP=OFF LPS=spx LPSCHECK=OFF NOBLKBUFMEM=OFF NOBLKMEM=OFF NOBUFMEM=OFF THREADSAFE=ON READLINE=off SANITIZE_ADDRESS=OFF SANITIZE_MEMORY=OFF SANITIZE_UNDEFINED=OFF SANITIZE_THREAD=OFF SHARED=ON VERSION=8.0.3.0 API_VERSION=104 ZIMPL=ON ZLIB=ON |
/usr/bin/scons | SCons by Steven Knight et al.: SCons: v4.0.1.c289977f8b34786ab6c334311e232886da7e8df1, 2020-07-17 01:50:03, by bdbaddog on ProDog2020 SCons path: ['/usr/lib/python3/dist-packages/SCons'] Copyright (c) 2001 - 2020 The SCons Foundation |
/usr/bin/sed | sed (GNU sed) 4.8 Packaged by Debian Copyright (C) 2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Jay Fenlason, Tom Lord, Ken Pizzini, Paolo Bonzini, Jim Meyering, and Assaf Gordon. This sed program was built with SELinux support. SELinux is disabled on this system. GNU sed home page: <https://www.gnu.org/software/sed/>. General help using GNU software: <https://www.gnu.org/gethelp/>. E-mail bug reports to: <[email protected]>. |
/usr/bin/sha1sum | sha1sum (GNU coreutils) 8.32 Copyright (C) 2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Ulrich Drepper, Scott Miller, and David Madore. |
/usr/bin/sha256sum | sha256sum (GNU coreutils) 8.32 Copyright (C) 2020 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>. This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Written by Ulrich Drepper, Scott Miller, and David Madore. |
/usr/local/bin/shiny | Usage: shiny [OPTIONS] COMMAND [ARGS]... Options: --version Show the version and exit. --help Show this message and exit. Commands: add Add files to enhance your Shiny app. cells-to-app Convert a JSON file with code cells to a py file. create Create a Shiny application from a template. get-shiny-deps Get Shiny's HTML dependencies as JSON. run Run a Shiny app (press Ctrl+C to stop). static The functionality from `shiny static` has been moved to... static-assets Manage local copy of assets for static app deployment. |
/usr/bin/Singular | Singular for x86_64-Linux version 4.2.1 (4212, 64 bit) Dec 17 2021 20:20:53
with
GMP(6.2.1),NTL(11.5.1),FLINT(2.8.0),
omalloc,static readline(8),Plural,vspace(2),DBM,
dynamic modules,OM_NDEBUG,SING_NDEBUG,
CC:OPTIMIZE,GenericAdd,TableMult,no invTable,
eigenvalues,Gauss-Manin system,random=1727695121
built-in modules: {}
AC_CONFIGURE_ARGS = '--build=x86_64-linux-gnu' '--prefix=/usr' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--disable-option-checking' '--disable-silent-rules' '--libdir=${prefix}/lib/x86_64-linux-gnu' '--runstatedir=/run' '--disable-maintainer-mode' '--disable-dependency-tracking' '--libexecdir=/usr/libexec/x86_64-linux-gnu' '--enable-streamio' 'build_alias=x86_64-linux-gnu' 'CFLAGS=-g -O2 -ffile-prefix-map=/build/singular-pPci2W/singular-4.2.1-p3+ds=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security' 'LDFLAGS=-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' 'CXXFLAGS=-g -O2 -ffile-prefix-map=/build/singular-pPci2W/singular-4.2.1-p3+ds=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security' 'PYTHON=/usr/bin/python3' --enable-omalloc OMALLOC_LIBS='/build/singular-pPci2W/singular-4.2.1-p3+ds/omalloc/libsingular-omalloc.la' OMALLOC_INCLUDES='-I/build/singular-pPci2W/singular-4.2.1-p3+ds' --with-Singular RESOURCES_LIBS='/build/singular-pPci2W/singular-4.2.1-p3+ds/resources/libsingular-resources.la' RESOURCES_INCLUDES='-I/build/singular-pPci2W/singular-4.2.1-p3+ds ' FACTORY_LIBS='/build/singular-pPci2W/singular-4.2.1-p3+ds/factory/libsingular-factory.la' FACTORY_INCLUDES='-I/build/singular-pPci2W/singular-4.2.1-p3+ds -I/build/singular-pPci2W/singular-4.2.1-p3+ds/factory -I/build/singular-pPci2W/singular-4.2.1-p3+ds/factory/include',
CC = gcc,FLAGS : -g -O2 -ffile-prefix-map=/build/singular-pPci2W/singular-4.2.1-p3+ds=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pipe -fno-common -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -pthread -pthread,
CXX = g++,FLAGS : -g -O2 -ffile-prefix-map=/build/singular-pPci2W/singular-4.2.1-p3+ds=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pipe -fno-common -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-rtti -fno-delete-null-pointer-checks -pthread,
DEFS : ,CPPFLAGS : -Wdate-time -D_FORTIFY_SOURCE=2,
LDFLAGS : -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -pipe -fno-common -g -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -rdynamic -Wl,-undefined,dynamic_lookup,LIBS : -lcddgmp -lreadline -lncurses -lmpfr -lgmp -lrt -lpthread (ver: 11.2.0)
argv[0] : Singular
SearchPath: /usr/bin/../share/singular/LIB:/usr/bin/../share/singular/factory:/usr/libexec/x86_64-linux-gnu/singular/MOD:/usr/bin
Singular : /usr/bin/Singular
BinDir : /usr/bin
ProcDir : /usr/libexec/x86_64-linux-gnu/singular/MOD
RootDir : /usr/bin/..
DataDir : /usr/bin/../share
DefaultDir: /usr
InfoFile :
IdxFile :
HtmlDir :
ManualUrl : https://www.singular.uni-kl.de/Manual/
ExDir :
Path : /usr/bin:/usr/libexec/x86_64-linux-gnu/singular/MOD:/home/user/bin:/home/user/.local/bin:/cocalc/bin:/ext/bin/nosudo:/ext/bin:/usr/lib/xpra:/usr/local/sbin:/usr/local/bin:/usr/sbin:/sbin:/bin:/ext/data/homer/bin:/ext/data/weblogo:/usr/lib/postgresql/15/bin:/home/user/.gem/ruby/2.3.0/bin
emacs : /usr/bin/emacs
xemacs :
SingularEmacs: /usr/bin/Singular
EmacsLoad :
EmacsDir :
SingularXterm: /usr/bin/Singular
xterm : /usr/bin/xterm
EmacsDir :
Available HelpBrowsers: lynx-www, dummy, emacs,
Current HelpBrowser: lynx-www
SINGULAR / Development
A Computer Algebra System for Polynomial Computations / version 4.2.1
0<
by: W. Decker, G.-M. Greuel, G. Pfister, H. Schoenemann \ May 2021
FB Mathematik der Universitaet, D-67653 Kaiserslautern \ Debian 1:4.2.1-p3+ds-1
// ** Can not open /dev/null
Auf Wiedersehen. |
/usr/local/bin/Singular-sage | Singular for x86_64-Linux version 4.4.0 (44000, 64 bit) Apr 2024
with
GMP(6.2.1),NTL(11.5.1),FLINT(3.1.0),
omalloc,static readline(8),Plural,vspace(2),DBM,
dynamic modules,OM_NDEBUG,SING_NDEBUG,
CC:OPTIMIZE,GenericAdd,TableMult,no invTable,
eigenvalues,Gauss-Manin system,random=1727695122
built-in modules: {}
AC_CONFIGURE_ARGS = '--prefix=/ext/sage/10.4/local' '--libdir=/ext/sage/10.4/local/lib' '--disable-maintainer-mode' '--disable-dependency-tracking' '--exec-prefix=/ext/sage/10.4/local' '--bindir=/ext/sage/10.4/local/bin' '--with-ntl=/ext/sage/10.4/local' '--with-flint=/ext/sage/10.4/local' '--enable-gfanlib' '--enable-Singular' '--enable-factory' '--disable-doc' '--disable-polymake' '--without-python' '--without-pythonmodule' '--disable-python' '--disable-python_module' '--disable-python-module' '--disable-static' '--with-libparse' 'CC=gcc' 'CFLAGS=-g -O2' 'LDFLAGS=-Wl,-rpath-link,/ext/sage/10.4/local/lib -L/ext/sage/10.4/local/lib -Wl,-rpath,/ext/sage/10.4/local/lib -Wl,-rpath-link,/ext/sage/10.4/local/lib -L/ext/sage/10.4/local/lib -Wl,-rpath,/ext/sage/10.4/local/lib ' 'CXX=g++ -std=gnu++11' 'CXXFLAGS=-g -O2' --enable-omalloc OMALLOC_LIBS='/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src/omalloc/libomalloc.la' OMALLOC_INCLUDES='-I/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src' --htmldir=${prefix}/share/doc/singular --with-Singular RESOURCES_LIBS='/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src/resources/libsingular_resources.la' RESOURCES_INCLUDES='-I/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src ' FACTORY_LIBS='/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src/factory/libfactory.la' FACTORY_INCLUDES='-I/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src -I/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src/factory -I/ext/sage/10.4/local/var/tmp/sage/build/singular-4.4.0/src/factory/include',
CC = gcc,FLAGS : -g -O2 -pipe -fno-common -g0 -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fconserve-space -funroll-loops -pthread -pthread,
CXX = g++ -std=gnu++11,FLAGS : -g -O2 -pipe -fno-common -g0 -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-rtti -fno-delete-null-pointer-checks -pthread,
DEFS : ,CPPFLAGS : ,
LDFLAGS : -Wl,-rpath-link,/ext/sage/10.4/local/lib -L/ext/sage/10.4/local/lib -Wl,-rpath,/ext/sage/10.4/local/lib -Wl,-rpath-link,/ext/sage/10.4/local/lib -L/ext/sage/10.4/local/lib -Wl,-rpath,/ext/sage/10.4/local/lib -pipe -fno-common -g0 -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fconserve-space -funroll-loops -rdynamic -Wl,-undefined,dynamic_lookup,LIBS : -lreadline -lncurses -lgmp -lrt (ver: 11.4.0)
argv[0] : Singular
SearchPath: /ext/sage/10.4/local/bin/../share/singular/LIB:/ext/sage/10.4/local/bin/../share/factory:/ext/sage/10.4/local/bin/../libexec/singular/MOD:/ext/sage/10.4/local/libexec/singular/MOD:/ext/sage/10.4/local/bin:/ext/sage/10.4/local/bin/..
Singular : /ext/sage/10.4/local/bin/Singular
BinDir : /ext/sage/10.4/local/bin
ProcDir : /ext/sage/10.4/local/bin/..:/ext/sage/10.4/local/bin/../libexec/singular/MOD:/ext/sage/10.4/local/libexec/singular/MOD
RootDir : /ext/sage/10.4/local/bin/..
DataDir : /ext/sage/10.4/local/bin/../share
DefaultDir: /ext/sage/10.4/local
InfoFile : /ext/sage/10.4/local/bin/../share/info/singular.info
IdxFile : /ext/sage/10.4/local/bin/../share/singular/singular.idx
HtmlDir : /ext/sage/10.4/local/bin/../share/doc/singular
ManualUrl : https://www.singular.uni-kl.de/Manual/
ExDir :
Path : /ext/sage/10.4/local/bin:/ext/sage/10.4/local/bin/..:/ext/sage/10.4/local/bin/../libexec/singular/MOD:/ext/sage/10.4/local/libexec/singular/MOD:/ext/sage/10.4/src/bin:/ext/sage/10.4/local/libexec/ccache:/ext/sage/10.4/build/bin:/ext/sage/10.4/local/var/lib/sage/venv-python3.12.4/bin:/home/user/bin:/home/user/.local/bin:/cocalc/bin:/ext/bin/nosudo:/ext/bin:/usr/lib/xpra:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/ext/data/homer/bin:/ext/data/weblogo:/usr/lib/postgresql/15/bin:/home/user/.gem/ruby/2.3.0/bin
emacs : /usr/bin/emacs-gtk
xemacs :
SingularEmacs: /ext/sage/10.4/local/bin/Singular
EmacsLoad : /ext/sage/10.4/local/bin/../share/singular/emacs/.emacs-singular
EmacsDir : /ext/sage/10.4/local/bin/../share/singular/emacs
SingularXterm: /ext/sage/10.4/local/bin/Singular
xterm : /usr/bin/xterm
EmacsDir : /ext/sage/10.4/local/bin/../share/singular/emacs
Available HelpBrowsers: info, lynx, lynx-www-idx, lynx-www, builtin, dummy, emacs,
Current HelpBrowser: info
SINGULAR /
A Computer Algebra System for Polynomial Computations / version 4.4.0
0<
by: W. Decker, G.-M. Greuel, G. Pfister, H. Schoenemann \ Apr 2024
FB Mathematik der Universitaet, D-67653 Kaiserslautern \
// ** Can not open /dev/null
Auf Wiedersehen. |
/usr/bin/sml | sml 110.79 |
/ext/bin/soplex | SoPlex version 6.0.3 [mode: optimized] [precision: 8 byte] [rational: GMP 6.2.1] [PaPILO 2.1.2 {2fe2543}]
[githash: f900e3d0]
Copyright (c) 1996-2022 Konrad-Zuse-Zentrum fuer Informationstechnik Berlin (ZIB)
Error parsing setting string: no ':' separating parameter type and name.
invalid option "--version"
usage: soplex [options] <lpfile>
<lpfile> linear program as .mps[.gz] or .lp[.gz] file
general options:
--readbas=<basfile> read starting basis from file
--writebas=<basfile> write terminal basis to file
--writefile=<lpfile> write LP to file in LP or MPS format depending on extension
--writedual=<lpfile> write the dual LP to a file in LP or MPS formal depending on extension
--<type>:<name>=<val> change parameter value using syntax of settings file entries
--loadset=<setfile> load parameters from settings file (overruled by command line parameters)
--saveset=<setfile> save parameters to settings file
--diffset=<setfile> save modified parameters to settings file
--extsol=<value> external solution for soplex to use for validation
limits and tolerances:
-t<s> set time limit to <s> seconds
-i<n> set iteration limit to <n>
-f<eps> set primal feasibility tolerance to <eps>
-o<eps> set dual feasibility (optimality) tolerance to <eps>
-l<eps> set validation tolerance to <eps>
algorithmic settings (* indicates default):
--readmode=<value> choose reading mode for <lpfile> (0* - floating-point, 1 - rational)
--solvemode=<value> choose solving mode (0 - floating-point solve, 1* - auto, 2 - force iterative refinement)
--arithmetic=<value> choose base arithmetic type (0 - double, 1 - quadprecision, 2 - higher multiprecision)
--precision=<value> choose precision for multiprecision solve (only active when arithmetic=2, possible values 50,100,200, compile with mpfr for arbitrary precision)
-s<value> choose simplifier/presolver (0 - off, 1* - internal, 2*- PaPILO)
-g<value> choose scaling (0 - off, 1 - uni-equilibrium, 2* - bi-equilibrium, 3 - geometric, 4 - iterated geometric, 5 - least squares, 6 - geometric-equilibrium)
-p<value> choose pricing (0* - auto, 1 - dantzig, 2 - parmult, 3 - devex, 4 - quicksteep, 5 - steep)
-r<value> choose ratio tester (0 - textbook, 1 - harris, 2 - fast, 3* - boundflipping)
display options:
-v<level> set verbosity to <level> (0 - error, 3 - normal, 5 - high)
-x print primal solution
-y print dual multipliers
-X print primal solution in rational numbers
-Y print dual multipliers in rational numbers
-q display detailed statistics
-c perform final check of optimal solution in original problem
|
/usr/bin/sqlite | 2.8.17 |
/usr/bin/sqlite3 | 3.37.2 2022-01-06 13:25:41 872ba256cbf61d9290b571c0e6d82a20c224ca3ad82971edc46b29818d5dalt1 |
/usr/bin/sqlline |
╔═════════════════════════════════════════════════════════════╗
║ ⚠ SYSTEM UTILITY NOT AVAILABLE -> USE COMPUTE SERVERS ⚠ ║
╠═════════════════════════════════════════════════════════════╣
║ It is not possible to run this utility in a CoCalc project. ║
╟─────────────────────────────────────────────────────────────╢
║ However, you can become an admin in a 𝗖𝗢𝗠𝗣𝗨𝗧𝗘 𝗦𝗘𝗥𝗩𝗘𝗥! ║
║ Learn more here: https://doc.cocalc.com/compute_server.html ║
╚═════════════════════════════════════════════════════════════╝
[warning] /usr/bin/sqlline: Unable to locate mariadb-java-client in /usr/share/java
[warning] /usr/bin/sqlline: Unable to locate hsqldb in /usr/share/java
[warning] /usr/bin/sqlline: Unable to locate jtds in /usr/share/java
Picked up _JAVA_OPTIONS: -Xms64m
Usage: java sqlline.SqlLine
-u <database url> the JDBC URL to connect to
-n <username> the username to connect as
-p <password> the password to connect as
-d <driver class> the driver class to use
--color=[true/false] control whether color is used for display
--showHeader=[true/false] show column names in query results
--headerInterval=ROWS; the interval between which heades are displayed
--fastConnect=[true/false] skip building table/column list for tab-completion
--autoCommit=[true/false] enable/disable automatic transaction commit
--verbose=[true/false] show verbose error messages and debug info
--showWarnings=[true/false] display connection warnings
--force=[true/false] continue running script even after errors
--maxWidth=MAXWIDTH the maximum width of the terminal
--maxColumnWidth=MAXCOLWIDTH the maximum width to use when displaying columns
--silent=[true/false] be more silent
--autosave=[true/false] automatically save preferences
--outputformat=[table/vertical/csv/tsv] format mode for result display
--isolation=LEVEL set the transaction isolation level
--help display this message |
/usr/bin/ssh | OpenSSH_8.9p1 Ubuntu-3ubuntu0.10, OpenSSL 3.0.2 15 Mar 2022 |
/usr/bin/stack | 2.3.3 x86_64 Compiled with: - Cabal-3.0.1.0 - Glob-0.10.1 - StateVar-1.2 - aeson-1.4.7.1 - annotated-wl-pprint-0.7.0 - ansi-terminal-0.10.3 - ansi-wl-pprint-0.6.9 - array-0.5.4.0 - asn1-encoding-0.9.6 - asn1-parse-0.9.5 - asn1-types-0.3.4 - async-2.2.2 - attoparsec-0.13.2.4 - attoparsec-iso8601-1.0.1.0 - auto-update-0.1.6 - base-4.13.0.0 - base-compat-0.11.1 - base-compat-batteries-0.11.1 - base-orphans-0.8.2 - base16-bytestring-0.1.1.7 - base64-bytestring-1.0.0.3 - basement-0.0.11 - bifunctors-5.5.7 - binary-0.8.7.0 - bitarray-0.0.1.1 - blaze-builder-0.4.1.0 - blaze-html-0.9.1.2 - blaze-markup-0.8.2.7 - bytestring-0.10.10.1 - casa-client-0.0.1 - casa-types-0.0.1 - case-insensitive-1.2.1.0 - cereal-0.5.8.1 - clock-0.8 - colour-2.3.5 - comonad-5.0.6 - conduit-1.3.2 - conduit-extra-1.3.5 - connection-0.3.1 - constraints-0.12 - containers-0.6.2.1 - contravariant-1.5.2 - cookie-0.4.5 - cryptohash-sha256-0.11.101.0 - cryptonite-0.26 - cryptonite-conduit-0.2.2 - data-default-class-0.1.2.0 - deepseq-1.4.4.0 - digest-0.0.1.2 - directory-1.3.6.0 - distributive-0.6.2 - dlist-0.8.0.8 - easy-file-0.2.2 - echo-0.1.3 - ed25519-0.0.5.0 - either-5.0.1.1 - enclosed-exceptions-1.0.3 - exceptions-0.10.4 - extra-1.7.4 - fast-logger-3.0.1 - file-embed-0.0.12.0 - filelock-0.1.1.5 - filepath-1.4.2.1 - fsnotify-0.3.0.1 - generic-deriving-1.13.1 - ghc-boot-th-8.8.4 - ghc-prim-0.5.3 - hackage-security-0.6.0.1 - hashable-1.3.0.0 - hi-file-parser-0.1.0.0 - hinotify-0.4 - hourglass-0.2.12 - hpack-0.34.2 - hpc-0.6.0.3 - http-api-data-0.4.1.1 - http-client-0.6.4.1 - http-client-tls-0.3.5.3 - http-conduit-2.3.7.3 - http-download-0.2.0.0 - http-types-0.12.3 - infer-license-0.2.0 - integer-gmp-1.0.2.0 - integer-logarithms-1.0.3 - libyaml-0.1.2 - lifted-async-0.10.1.2 - lifted-base-0.2.3.12 - megaparsec-8.0.0 - memory-0.15.0 - microlens-0.4.11.2 - microlens-mtl-0.2.0.1 - microlens-th-0.4.3.5 - mime-types-0.1.0.9 - monad-control-1.0.2.3 - monad-logger-0.3.34 - monad-loops-0.4.3 - mono-traversable-1.0.15.1 - mtl-2.2.2 - mustache-2.3.1 - neat-interpolation-0.3.2.6 - network-3.1.1.1 - network-uri-2.6.3.0 - old-locale-1.0.0.7 - old-time-1.1.0.3 - open-browser-0.2.1.0 - optparse-applicative-0.15.1.0 - pantry-0.4.0.2 - parsec-3.1.14.0 - parser-combinators-1.2.1 - path-0.7.0 - path-io-1.6.0 - path-pieces-0.2.1 - pem-0.2.4 - persistent-2.10.5.2 - persistent-sqlite-2.10.6.2 - persistent-template-2.8.2.3 - pretty-1.1.3.6 - primitive-0.7.0.1 - process-1.6.9.0 - profunctors-5.5.2 - project-template-0.2.1.0 - random-1.1 - regex-applicative-0.3.3.1 - regex-applicative-text-0.1.0.1 - resource-pool-0.2.3.2 - resourcet-1.2.4.2 - retry-0.8.1.2 - rio-0.1.18.0 - rio-orphans-0.1.1.0 - rio-prettyprint-0.1.1.0 - rts-1.0 - safe-0.3.19 - safe-exceptions-0.1.7.0 - scientific-0.3.6.2 - semigroupoids-5.3.4 - semigroups-0.19.1 - shelly-1.9.0 - silently-1.2.5.1 - socks-0.6.1 - split-0.2.3.4 - stm-2.5.0.0 - stm-chans-3.0.0.4 - streaming-commons-0.2.2.1 - syb-0.7.1 - tagged-0.8.6 - tar-0.5.1.1 - tar-conduit-0.3.2 - template-haskell-2.15.0.0 - temporary-1.3 - text-1.2.4.0 - text-metrics-0.3.0 - th-abstraction-0.3.2.0 - th-expand-syns-0.4.6.0 - th-lift-0.8.1 - th-lift-instances-0.1.17 - th-reify-many-0.1.9 - time-1.9.3 - time-compat-1.9.3 - tls-1.5.4 - transformers-0.5.6.2 - transformers-base-0.4.5.2 - transformers-compat-0.6.5 - type-equality-1 - typed-process-0.2.6.0 - unicode-transforms-0.3.6 - unix-2.7.2.2 - unix-compat-0.5.2 - unix-time-0.4.7 - unliftio-0.2.13 - unliftio-core-0.1.2.0 - unordered-containers-0.2.10.0 - uuid-types-1.0.3 - vector-0.12.1.2 - vector-algorithms-0.8.0.3 - x509-1.7.5 - x509-store-1.6.7 - x509-system-1.6.6 - x509-validation-1.6.11 - yaml-0.11.4.0 - zip-archive-0.4.1 - zlib-0.6.2.2 Warning: this is an unsupported build that may use different versions of dependencies and GHC than the officially released binaries, and therefore may not behave identically. If you encounter problems, please try the latest official build by running 'stack upgrade --force-download'. |
/usr/local/bin/stapler | usage: usage: stapler [options] mode (input.pdf|input handle) ... [output.pdf]
Modes:
cat/sel: <inputfile>|<input handle> [<pagerange>[<rotation>]] ... (output needed)
Select the given pages/ranges from input files.
No range means all pages.
del: <inputfile> [<pagerange>[<rotation>]] ... (output needed)
Select all but the given pages/ranges from input files.
burst/split: <inputfile> ... (no output needed)
Create one file per page in input pdf files (no output needed)
zip: <inputfile>|<input handle> [<pagerange>[<rotation>]] ... (output needed)
Merge/Collate the given input files interleaved.
background: <inputfile> [<pagerange>[<rotation>]] ... (output needed)
Merge/Overlay the given input files interleaved.
info: <inputfile> ... (no output needed)
Display PDF metadata
list-log(ical): <inputfile>
Display the logical names of each page.
Input handle:
A single, upper-case letter as an alias to a file
For example: A=input1.pdf B=input2.pdf
Page ranges:
n - single numbers mean single pages (e.g., 15)
n-m - page ranges include the entire specified range (e.g. 1-6)
m-n - negative ranges sort pages backwards (e.g., 6-3)
Extended page range options:
...-end will be replaced with the last page in the file
R, L, or D will rotate the respective range +90, -90, or 180 degrees,
respectively. (e.g., 1-15R)
positional arguments:
mode requested stapler mode
options:
-h, --help show this help message and exit
-o OWNERPW, --ownerpw OWNERPW
Set owner password to encrypt output file with
-u USERPW, --userpw USERPW
Set user password to encrypt output file with
-v, --verbose
-f, --force Overwrite output file if it exists
-d DESTDIR, --destdir DESTDIR
directory where to store output file |
/usr/local/bin/streamlit | Streamlit, version 1.30.0 |
/usr/bin/sumo | Eclipse SUMO sumo Version 1.20.0 Build features: Linux-5.4.0-177-generic x86_64 GNU 11.4.0 Release FMI Proj GUI Intl SWIG GDAL GL2PS Eigen Copyright (C) 2001-2024 German Aerospace Center (DLR) and others; https://sumo.dlr.de Eclipse SUMO sumo Version 1.20.0 is part of SUMO. This program and the accompanying materials are made available under the terms of the Eclipse Public License v2.0 which accompanies this distribution, and is available at http://www.eclipse.org/legal/epl-v20.html This program may also be made available under the following Secondary Licenses when the conditions for such availability set forth in the Eclipse Public License 2.0 are satisfied: GNU General Public License, version 2 or later which is available at https://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html SPDX-License-Identifier: EPL-2.0 OR GPL-2.0-or-later |
/usr/bin/syco | EMBOSS:6.6.0.0 |
/usr/bin/symphony | == Welcome to the SYMPHONY MILP Solver == Copyright 2000-2019 Ted Ralphs and others == All Rights Reserved. == Distributed under the Eclipse Public License 1.0 == Version: 5.6.17 == Build Date: Oct 16 2021 |
/usr/bin/synctex | This is SyncTeX command line utility, version 1.5 usage: synctex <subcommand> [options] [args] Synchronize TeXnology command-line client, version 1.21 The Synchronization TeXnology by Jérôme Laurens is a rather new feature of recent TeX engines. It allows to synchronize between input and output, which means to navigate from the source document to the typeset material and vice versa. Available subcommands: view to perform forwards synchronization edit to perform backwards synchronization update to update a synctex file after a dvi/xdv to pdf filter help this help Type 'synctex help <subcommand>' for help on a specific subcommand. There is also an undocumented test subcommand. |
/usr/bin/t1asm | t1asm (LCDF t1utils) 1.41 Copyright (C) 1992-2017 I. Lee Hetherington, Eddie Kohler et al. This is free software; see the source for copying conditions. There is NO warranty, not even for merchantability or fitness for a particular purpose. |
/usr/bin/tclsh | 8.6 |
/usr/local/bin/texsurgery | usage: texsurgery [-h] [-pdf] [-tex] [-replace REPLACE REPLACE] [-find FIND]
[-shuffle SHUFFLE SHUFFLE] [-randomseed RANDOMSEED]
[--output_file OUTPUT_FILE] [--pdflatex-options ...]
[input_file]
TexSurgery passes code from latex files to jupyter kernels, and substitutes it
by the corresponding output.
positional arguments:
input_file file to parse. Uses stdin if none given.
options:
-h, --help show this help message and exit
-pdf create a pdf file from the modified latex (requires
pdflatex installed).
-tex just produce the modified latex (default).
-replace REPLACE REPLACE
finds a selector, replaces the first match with the
replacement text, outputs the result
-find FIND finds a selector, output the code for the innermost
part of the selector
-shuffle SHUFFLE SHUFFLE
finds a parent selector, and shuffles all matches of
the children selector within the parent, then outputs
the result
-randomseed RANDOMSEED
randomseed for -shuffle
--output_file OUTPUT_FILE, -o OUTPUT_FILE
file to write the output to.
--pdflatex-options ...
options to pass to pdflatex (requires the -pdf option) |
/usr/bin/tidy | HTML Tidy for Linux version 5.6.0 |
/usr/bin/tmux | tmux 3.2a |
/usr/local/bin/tmuxp | tmuxp 1.11.1, libtmux 0.11.0 |
/usr/bin/toilet | TOIlet Copyright 2006 Sam Hocevar Internet: <[email protected]> Version: 0.3, date: TOIlet, along with the various TOIlet fonts and documentation, may be freely copied and distributed. If you use TOIlet, please send an e-mail message to <[email protected]>. The latest version of TOIlet is available from the web site, http://libcaca.zoy.org/toilet.html Usage: toilet [ -hkostvSW ] [ -d fontdirectory ] [ -f fontfile ] [ -F filter ] [ -w outputwidth ] [ -I infocode ] [ -E format ] [ message ] |
/usr/sbin/traceroute | Modern traceroute for Linux, version 2.1.0 Copyright (c) 2016 Dmitry Butskoy, License: GPL v2 or any later |
/usr/bin/tsc | Version 5.5.4 |
/usr/bin/valgrind | valgrind-3.18.1 |
/usr/bin/vim | VIM - Vi IMproved 8.2 (2019 Dec 12, compiled Aug 27 2024 05:34:22) Included patches: 1-16, 647, 17-579, 1969, 580-647, 678, 648-1848, 4975, 5016, 5023, 5072, 2068, 1849-1854, 1857, 1855-1857, 1331, 1858, 1858-1859, 1873, 1860-1969, 1992, 1970-1992, 2010, 1993-2068, 2106, 2069-2106, 2108, 2107-2109, 2109-3995, 4563, 4646, 4774, 4895, 4899, 4901, 4919, 213, 1840, 1846-1847, 2110-2112, 2121 Modified by [email protected] Compiled by [email protected] Huge version with GTK3 GUI. Features included (+) or not (-): +acl +file_in_path +mouse_urxvt -tag_any_white +arabic +find_in_path +mouse_xterm +tcl +autocmd +float +multi_byte +termguicolors +autochdir +folding +multi_lang +terminal -autoservername -footer -mzscheme +terminfo +balloon_eval +fork() +netbeans_intg +termresponse +balloon_eval_term +gettext +num64 +textobjects +browse -hangul_input +packages +textprop ++builtin_terms +iconv +path_extra +timers +byte_offset +insert_expand +perl +title +channel +ipv6 +persistent_undo +toolbar +cindent +job +popupwin +user_commands +clientserver +jumplist +postscript +vartabs +clipboard +keymap +printer +vertsplit +cmdline_compl +lambda +profile +vim9script +cmdline_hist +langmap -python +viminfo +cmdline_info +libcall +python3 +virtualedit +comments +linebreak +quickfix +visual +conceal +lispindent +reltime +visualextra +cryptv +listcmds +rightleft +vreplace +cscope +localmap +ruby +wildignore +cursorbind +lua +scrollbind +wildmenu +cursorshape +menu +signs +windows +dialog_con_gui +mksession +smartindent +writebackup +diff +modify_fname +sodium +X11 +digraphs +mouse +sound -xfontset +dnd +mouseshape +spell +xim -ebcdic +mouse_dec +startuptime +xpm +emacs_tags +mouse_gpm +statusline +xsmp_interact +eval -mouse_jsbterm -sun_workshop +xterm_clipboard +ex_extra +mouse_netterm +syntax -xterm_save +extra_search +mouse_sgr +tag_binary -farsi -mouse_sysmouse -tag_old_static system vimrc file: "$VIM/vimrc" user vimrc file: "$HOME/.vimrc" 2nd user vimrc file: "~/.vim/vimrc" user exrc file: "$HOME/.exrc" system gvimrc file: "$VIM/gvimrc" user gvimrc file: "$HOME/.gvimrc" 2nd user gvimrc file: "~/.vim/gvimrc" defaults file: "$VIMRUNTIME/defaults.vim" system menu file: "$VIMRUNTIME/menu.vim" fall-back for $VIM: "/usr/share/vim" Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -DFEAT_GUI_GTK -pthread -I/usr/include/gtk-3.0 -I/usr/include/at-spi2-atk/2.0 -I/usr/include/at-spi-2.0 -I/usr/include/dbus-1.0 -I/usr/lib/x86_64-linux-gnu/dbus-1.0/include -I/usr/include/gtk-3.0 -I/usr/include/gio-unix-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/x86_64-linux-gnu -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -Wdate-time -g -O2 -ffile-prefix-map=/build/vim-v7nC4l/vim-8.2.3995=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -D_REENTRANT -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 Linking: gcc -L. -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -fstack-protector-strong -rdynamic -Wl,-export-dynamic -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o vim -lgtk-3 -lgdk-3 -lpangocairo-1.0 -lpango-1.0 -lharfbuzz -latk-1.0 -lcairo-gobject -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lgobject-2.0 -lglib-2.0 -lSM -lICE -lXpm -lXt -lX11 -lXdmcp -lSM -lICE -lm -ltinfo -lselinux -lcanberra -lsodium -lacl -lattr -lgpm -L/usr/lib -llua5.2 -Wl,-E -fstack-protector-strong -L/usr/local/lib -L/usr/lib/x86_64-linux-gnu/perl/5.34/CORE -lperl -ldl -lm -lpthread -lcrypt -L/usr/lib/python3.10/config-3.10-x86_64-linux-gnu -lpython3.10 -lcrypt -ldl -lm -lm -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -ldl -lz -lpthread -lm -lruby-3.0 -lm -L/usr/lib |
/usr/bin/vis | vis v0.7 +curses +lua +tre +acl +selinux |
/usr/bin/wdiff | wdiff (GNU wdiff) 1.2.2 Copyright (C) 1992, 1997, 1998, 1999, 2009, 2010, 2011, 2012 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Written by Franc,ois Pinard <[email protected]>. |
/usr/local/bin/weasyprint | WeasyPrint version 62.3 |
/usr/bin/which | /usr/sbin/rpcinfo |
/usr/bin/wordmatch | EMBOSS:6.6.0.0 |
/usr/bin/xclip | xclip version 0.13 Copyright (C) 2001-2008 Kim Saunders et al. Distributed under the terms of the GNU GPL |
/usr/bin/xdotool | xdotool version 3.20160805.1 |
/usr/bin/xelatex | XeTeX 3.141592653-2.6-0.999993 (TeX Live 2022/dev/Debian) kpathsea version 6.3.4/dev Copyright 2021 SIL International, Jonathan Kew and Khaled Hosny. There is NO warranty. Redistribution of this software is covered by the terms of both the XeTeX copyright and the Lesser GNU General Public License. For more information about these matters, see the file named COPYING and the XeTeX source. Primary author of XeTeX: Jonathan Kew. Compiled with ICU version 70.1; using 70.1 Compiled with zlib version 1.2.11; using 1.2.11 Compiled with FreeType2 version 2.11.1; using 2.11.1 Compiled with Graphite2 version 1.3.14; using 1.3.14 Compiled with HarfBuzz version 2.7.4; using 2.7.4 Compiled with libpng version 1.6.37; using 1.6.37 Compiled with pplib version v2.05 less toxic i hope Compiled with fontconfig version 2.13.1; using 2.13.1 |
/usr/bin/xindy | xindy release: unknown
xindy script version: 1.18
xindy kernel version: 3.0
CLISP version 2.49.93+ (2018-02-18) (built on lcy02-amd64-013.buildd [127.0.1.1])
architecture: X86_64 |
/usr/bin/xpra | xpra v3.1 |
/usr/bin/xsel | xsel version 1.2.0 by Conrad Parker <[email protected]> |
/usr/bin/xz | xz (XZ Utils) 5.2.5 liblzma 5.2.5 |
/usr/bin/yacc | bison (GNU Bison) 3.8.2 Written by Robert Corbett and Richard Stallman. Copyright (C) 2021 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. |
/usr/local/bin/yapf | yapf 0.40.2 |
/usr/bin/z3 | Z3 version 4.8.12 - 64 bit |
/ext/bin/zig | 0.11.0 |
/ext/bin/zimpl | 3.5.3 |
/usr/bin/zotero | Zotero Zotero 115.14.0esr, Copyright (c) 2006-2022 Contributors |
/usr/bin/zsh | zsh 5.8.1 (x86_64-ubuntu-linux-gnu) |
This information was collected at 20240930-1117.